https://github.com/ome/stats

https://github.com/ome/stats

Last synced: 12 months ago
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• Host: GitHub
• URL: https://github.com/ome/stats
• Owner: ome
• License: agpl-3.0
• Created: 2015-09-02T14:18:03.000Z (almost 11 years ago)
• Default Branch: master
• Last Pushed: 2017-05-16T12:42:14.000Z (about 9 years ago)
• Last Synced: 2025-05-17T08:12:48.656Z (about 1 year ago)
• Language: Python
• Size: 780 KB
• Stars: 1
• Watchers: 7
• Forks: 5
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
OMERO.qa

========

OMERO.qa is the web application which helps support community by OMERO team.

Requirements

============

* PostgreSQL 8.2+

* Python 2.6+

Development Installation

========================

1. Clone the repository

        git clone git@github.com:openmicroscopy/stats.git

2. Set up a virtualenv (http://www.pip-installer.org/) and activate it

        pip install virtualenv

        virtualenv --system-site-packages stats-virtualenv

        source stats-virtualenv/bin/activate

3. Install dependencies

        pip install matplotlib

        pip install psycopg2

        pip install mercurial

        pip install -r requirements.txt

4. Dump and restore database.

5. Download and extract GeoIP databases

        GeoIP2-Domain.mmdb, GeoIPOrg.dat, GeoLite2-City.mmdb

Configuration

=============

* Create new settings-prod.py and import default settings

        from settings import *

* Set `DEBUG`

        DEBUG=False

        TEMPLATE_DEBUG = DEBUG

* Set `ADMINS`

        ADMINS = (

            ('Full Name', 'email@example.com'),

        )

* Change database settings

        DATABASES = {

            'default': {

                'ENGINE': 'django.db.backends.postgresql_psycopg2',

                                                # Add 'postgresql_psycopg2', 'mysql', 'sqlite3' or 'oracle'.

                'NAME': 'stats_database',       # Or path to database file if using sqlite3.

                'USER': 'stats_user',           # Not used with sqlite3.

                'PASSWORD': 'secret',           # Not used with sqlite3.

                'HOST': 'localhost',            # Set to empty string for localhost. Not used with sqlite3.

                'PORT': '5432',                 # Set to empty string for default. Not used with sqlite3.

            }

        }

* Set up email server

    

        # Application allows to notify user

        EMAIL_HOST = 'localhost'

        EMAIL_HOST_PASSWORD = ''

        EMAIL_HOST_USER = ''

        EMAIL_PORT = 25

        EMAIL_SUBJECT_PREFIX = '[OMERO.stats] '

        EMAIL_USE_TLS = False

        SERVER_EMAIL = 'email@example.com' # email address

* WSGI config file for virtual environment (omerostats/django.wsgi):

        import os

        import sys

        import site

        # Add the site-packages of the chosen virtualenv to work with

        site.addsitedir('/path/to/stats-virtualenv/lib64/python2.6/site-packages')

        # Add the app's directory to the PYTHONPATH

        sys.path.append('/path/to/stats.git/')

        sys.path.append('/path/to/stats.git/omerostats')

        os.environ.setdefault("DJANGO_SETTINGS_MODULE", "omerostats.settings-prod")

        # Activate your virtual env

        activate_env=os.path.expanduser('/path/to/stats-virtualenv/bin/activate_this.py')

        execfile(activate_env, dict(__file__=activate_env))

        import django.core.handlers.wsgi

        application = django.core.handlers.wsgi.WSGIHandler()

* Synchronise the database

        export DJANGO_SETTINGS_MODULE=omerostats.settings-prod

        python manage.py syncdb

        python manage.py sqlcustom registry | python manage.py dbshell

* Populated GEO details about IPs

        python upgrade/ip.py

* Collect statics

        python manage.py collectstatic

* Setup apache

    

        ServerAlias stats.openmicroscopy.org

        ServerName stats.openmicroscopy.org

        ServerAdmin sysadmin@openmicroscopy.org

        ErrorLog /var/log/httpd/stats.openmicroscopy.org.err

        CustomLog /var/log/httpd/stats.openmicroscopy.org.log combined

        DocumentRoot /home/omero-stats/stats.git

        WSGIDaemonProcess omerostats processes=2 threads=15 display-name=%{GROUP} python-path=/home/omero-stats/stats.git:/home/omero-stats/reg-virtualenv/lib/python2.6/site-packages

        WSGIProcessGroup omerostats

        WSGIScriptAlias / /home/omero-stats/stats.git/omerostats/django.wsgi

        

            Order allow,deny

            Allow from all

        

        Alias /static /home/omero-stats/stats.git/static

        

            Options -Indexes

        

    

    WSGISocketPrefix run/wsgi

Legal

=====

The source for OMERO.stats is released under the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

OMERO.stats is Copyright (C) 2015 University of Dundee