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https://github.com/openchemistry/avogadro-commands

Example default command scripts for Avogadro 2
https://github.com/openchemistry/avogadro-commands

chemistry python script

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Example default command scripts for Avogadro 2

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# avogadro-commands
Example default command scripts for Avogadro 2

- **flattenZ**: Flatten the z-axis of a molecule
- **replace**: Replace atoms of certain elements with others to form alloys
- **scale**: Modify x, y, and z coordinates by a scaling factor