https://github.com/openmendel/geneticvariantbase.jl

https://github.com/openmendel/geneticvariantbase.jl

Last synced: 9 months ago
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• Host: GitHub
• URL: https://github.com/openmendel/geneticvariantbase.jl
• Owner: OpenMendel
• License: mit
• Created: 2023-04-19T05:29:05.000Z (about 3 years ago)
• Default Branch: main
• Last Pushed: 2024-01-05T05:52:53.000Z (over 2 years ago)
• Last Synced: 2025-01-25T09:42:09.430Z (over 1 year ago)
• Language: Julia
• Size: 8.79 KB
• Stars: 2
• Watchers: 7
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# GeneticVariantBase

Defines utility functions and iterator interface for OpenMendel genetic variant packages: SnpArrays.jl (PLINK 1 `.bed`, `.bim`, `.fam`), VCFTools.jl (Variant Call Format `.vcf`), BGEN.jl (Oxford BGEN `.bgen`), and PGENFiles.jl (PLINK 2 `.pgen`, `.pvar`, `.psam`). Intended to be used in GWAS packages (`OrdinalGWAS.jl`, `TrajGWAS.jl`, `MendelGWAS.jl` (?)).