Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/openpmd/openpmd-projects
:clipboard: Overview on Projects around openPMD
https://github.com/openpmd/openpmd-projects
collection community fileformat libraries openpmd openscience
Last synced: about 2 months ago
JSON representation
:clipboard: Overview on Projects around openPMD
- Host: GitHub
- URL: https://github.com/openpmd/openpmd-projects
- Owner: openPMD
- License: cc0-1.0
- Created: 2015-11-10T16:53:25.000Z (about 9 years ago)
- Default Branch: main
- Last Pushed: 2024-05-30T18:01:39.000Z (7 months ago)
- Last Synced: 2024-05-30T21:04:50.082Z (7 months ago)
- Topics: collection, community, fileformat, libraries, openpmd, openscience
- Homepage: http://www.openPMD.org
- Size: 86.9 KB
- Stars: 8
- Watchers: 8
- Forks: 14
- Open Issues: 7
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
Projects using openPMD
----------------------
The following list of projects use the
[**openPMD** standard](https://github.com/openPMD/openPMD-standard)
to describe their data. For additional information, we list
third-party projects marked with a (`third party`) to acknowledge the
the work provided in those for our format handling.
### Documents
- [openPMD Standard](https://github.com/openPMD/openPMD-standard/blob/latest/STANDARD.md)
- domain: the fundamental, technical documents that serve as a basis for the
whole openPMD environment
- maintainer and initial author: A Huebl @ax3l
- contributions: [full list of contributors](https://github.com/openPMD/openPMD-standard/blob/latest/AUTHORS.md)
- [repository](https://github.com/openPMD/openPMD-standard)
([CC-BY 4.0](https://github.com/openPMD/openPMD-standard/releases))
- status:
- [`1.0.0` released](https://github.com/openPMD/openPMD-standard/releases/tag/1.0.0),
doi: [10.5281/zenodo.33624](https://dx.doi.org/10.5281/zenodo.33624)
- [`1.0.1` released](https://github.com/openPMD/openPMD-standard/releases/tag/1.0.1),
doi: [10.5281/zenodo.1069534](https://dx.doi.org/10.5281/zenodo.1069534)
- [`1.1.0` released](https://github.com/openPMD/openPMD-standard/releases/tag/1.1.0),
doi: [10.5281/zenodo.1167843](https://doi.org/10.5281/zenodo.1167843)
- [`2.0.0` in progress](https://github.com/openPMD/openPMD-standard/projects/3)
### Scientific Simulations
- [PIConGPU](http://picongpu.hzdr.de) (HZDR, Germany)
- domain: electro-dynamic particle-in-cell code
- [repository](https://github.com/ComputationalRadiationPhysics/picongpu) (GPLv3+/LGPLv3+)
- maintainers: A Huebl @ax3l, M Bussmann @bussmann et al.
- status: implemented (base standard + ED-PIC)
- [Warp](http://warp.lbl.gov) (LBNL & LLNL, United States)
- domain: electro-dynamic/static particle-in-cell code
- [repository](https://bitbucket.org/berkeleylab/warp) (BSD-3-Clause-LBNL)
- maintainers: JL Vay @jlvay, D Grote @dpgrote, R Lehe @RemiLehe et al.
- status: implemented (base standard + ED-PIC)
- [WarpX](https://ecp-warpx.github.io) (LBNL & LLNL, United States)
- domain: electro-dynamic/static particle-in-cell code
- [repository](https://github.com/ECP-WarpX/WarpX) (BSD-3-Clause-LBNL)
- maintainers: JL Vay @jlvay, D Grote @dpgrote, R Lehe @RemiLehe, M Thevenet @MaxThevenet, A Huebl @ax3l et al.
- status: implemented (base standard + ED-PIC)
- [FBPIC](http://fbpic.github.io) (LBNL, CFEL Hamburg University)
- domain: electro-dynamic particle-in-cell code with spetral solver and
Fourier-Bessel decomposition in cylindrical geometry
- [repository](https://github.com/fbpic/fbpic) (BSD-3-Clause-LBNL)
- maintainers: R Lehe @RemiLehe, M Kirchen @MKirchen et al.
- status: implemented (base standard + ED-PIC)
- [Wake-T](https://github.com/AngelFP/Wake-T) (DESY, Germany)
- domain: fast particle-tracking code for plasma-based accelerators
- [repository](https://github.com/AngelFP/Wake-T) (GPLv3+)
- maintainers: A Ferran Pousa @AngelFP
- status: implemented (base standard)
- SimEx Platform (EUCALL, European XFEL)
- domain: software platform for simulation of advanced photon experiments
- [repository](https://github.com/eucall-software/simex_platform) (GPLv3+)
- maintainer: C Fortmann-Grote @CFGrote
- status: implemented (base standard)
- [LUME](https://www.lume.science) (SLAC, USA)
- domain: particle accelerator & free-electron laser (FEL) modeling
- repositories: https://github.com/ChristopherMayes?tab=repositories&q=lume
- maintainers: C Mayes @ChristopherMayes et al.
- status: implemented (base standard + BeamPhysics + Wavefront)
- ParaTAXIS (HZDR, Germany)
- domain: parallel tracer for arbitrary X-ray interaction and scattering
- [repository](https://github.com/ComputationalRadiationPhysics/parataxis) (GPLv3+)
- maintainers: M Bussmann @bussmann et al.
- original author: A Grund @Flamefire
- status: implemented (base standard for X-ray laser & density profiles)
- OSIRIS (UCLA, USA and IST, Portugal)
- domain: electro-dynamic particle-in-cell code
- repository: closed, available through MoU
- maintainers: OSIRIS Consortium (UCLA/IST)
- original author: R G Hemker (UCLA)
- an openPMD fork for OSIRIS 4.0 is available from UCLA; existing grid data
can be converted from the previous OSIRIS file format to openPMD format by
using the python library https://github.com/UCLA-Plasma-Simulation-Group/pyVisOS
- UPIC-Emma (UCLA, USA)
- domain: 2-1/2D electromagnetic particle-in-cell code
- [repository](https://github.com/UCLA-Plasma-Simulation-Group/upic-emma-2.0) (UCLA-NC)
- maintainer: F Tsung @tsung1029
- original author: V Decyk
- status: implemented
- Sirepo/Warp PBA (RadiaSoft, USA)
- domain: 2-1/2D r-z electromagnetic PIC for beam-plasma and laser-plasma
- [repository](https://github.com/radiasoft/sirepo)
- [free use](https://www.sirepo.com/warppba)
- maintainers: P Moeller @moellep, R Nagler @robnagler, D Bruhwiler @bruhwiler
- original UI authors: P Moeller @moellep, R Nagler @robnagler
- original code authors: JL Vay @jlvay, D Grote @dpgrote
- status: implemented
- Sirepo/Warp VND (RadiaSoft, USA)
- domain: 2D and 3D Cartesian electrostatic PIC with complex boundaries and dielectrics
- [repository](https://github.com/radiasoft/sirepo)
- [free use](https://www.sirepo.com/warpvnd)
- maintainers: P Moeller @moellep, R Nagler @robnagler, N Cook @ncook882
- original UI authors: P Moeller @moellep, R Nagler @robnagler, N Cook @ncook882
- original code authors: D Grote @dpgrote, JL Vay @jlvay
- status: implemented
- [HiPACE++](https://hipace.readthedocs.io) (DESY, LBNL)
- domain: 3D GPU-capable quasi-static particle-in-cell code for plasma acceleration
- [repository](https://github.com/Hi-PACE/hipace) (BSD-3-Clause-LBNL)
- maintainers: M Thevenet @MaxThevenet, S Diederichs @SeverinDiederichs, A Huebl @ax3l et al.
- status: implemented
- ACE3P (SLAC, USA)
- domain: 3D parallel electromagnetics code suite
- repository: closed, available through MoU
- maintainers: Lixin Ge @lge, Cho-Kuen Ng @cho
- original code authors: Lixin Ge @lge, Cho-Kuen Ng @cho
- status:
- implemented – conversion tool for EM field on unstructured grid to structured grid (David A. Bizzozero, Ji Qiang, Lixin Ge, Zenghai Li, Cho-Kuen Ng Liling Xiao, "Multi-objective optimization with an integrated electromagnetics and beam dynamics workflow", Nuclear Inst. and Methods in Physics Research, A 1020 (2021) 165844).
- to be implemented - particles data on base standard.
- [CarpetX](https://bitbucket.org/eschnett/cactusamrex/wiki/Home), a new AMR driver intended for the [Einstein Toolkit](http://einsteintoolkit.org)
- domain: relativistic astrophysics (black holes, neutron stars, core-collapse supernovae, and more)
- maintainers: [Roland Haas](https://github.com/rhaas80), [Erik Schnetter](https://github.com/eschnett)
- repository: https://bitbucket.org/eschnett/cactusamrex
- status: openPMD is fully supported for reading/writing/checkpointing/recovery for 3D grids, including support for adaptive mesh refinement
- [Synergia3](https://synergia.fnal.gov/) (FNAL, USA)
- domain: accelerator modeling and simulation
- [repository](https://github.com/fnalacceleratormodeling/synergia2)
- current maintainers: [Eric Stern](https://github.com/egstern), [Marc Paterno](https://github.com/marcpaterno), [James Amundson](https://github.com/amundson), [Sajid Ali](https://github.com/s-sajid-ali)
- original code authors: James Amundson, Steve Goldhaber, Paul Lebrun, Qiming Lu, Alexandru Macridin, Leo Michelotti (CHEF libraries), Chong Shik Park, Panagiotis Spentzouris and Eric Stern
- status: openPMD I/O is implemented for bunch I/O and statistics. Internal checkpoints still use custom HDF5 formats, but these would likely be moved to openPMD in the future.
- [MALA (Materials Learning Algorithms)](https://mala-project.github.io/mala/) (CASUS, SNL)
- domain: ML models that replace density functional theory (DFT) calculations
- repository: https://github.com/mala-project/mala/ (BSD 3-Clause License)
- maintainers: Attila Cangi & Sivasankaran Rajamanickam (scientific supervision), Lenz Fiedler & Jon Vogel (code maintenance)
- status: openPMD implemented as a feature-complete alternative to the default Numpy I/O
- [Quokka](https://quokka-astro.github.io/quokka/) (ANU, MSU)
- domain: radiation hydrodynamics for astrophysics
- repository: https://github.com/quokka-astro/quokka (MIT License)
- maintainers: [Mark Krumholz](https://www.mso.anu.edu.au/~krumholz/), [Ben Wibking](https://benwibking.github.io/)
- original author: [Ben Wibking](https://benwibking.github.io/)
- status: openPMD implemented for outputs (cell-centered only)
### Data Processing and Visualization
- [openPMD-viewer](https://github.com/openPMD/openPMD-viewer) (LBNL, CFEL Hamburg University)
- domain: high level python api and interactive IPython notebook GUI
- [repository](https://github.com/openPMD/openPMD-viewer) (BSD-3-Clause-LBNL)
- maintainer: R Lehe @RemiLehe et al.
- status: implemented
- [yt project](http://yt-project.org) ([Members](http://yt-project.org/members.html), `third party`)
- domain: analysis and visualization
- [repository](https://github.com/yt-project/yt) (BSD-3-Clause)
- [openPMD tutorial](https://gist.github.com/C0nsultant/5808d5f61b271b8f969d5c09f5ca91dc)
- [openPMD wishlist/issue tracker](https://bitbucket.org/C0nsultant/openpmd/issues)
- maintainers: [yt project members](http://yt-project.org/members.html)
(HZDR: openPMD reader contribution by @C0nsultant)
- status:
- 3.4.0+: implemented (HDF5 reader for base standard: 1.0.0-1.0.1)
- 3.5.0+: implemented (HDF5 reader for base standard: 1.0.0-1.1.0)
- [VisIt](https://visit.llnl.gov) (LLNL, `third party`)
- domain: analysis and visualization
- [repository](http://www.visitusers.org/index.php?title=Version_Control) (BSD-3-Clause)
- [plugin repository](https://github.com/openPMD/openPMD-visit-plugin) (BSD-3-Clause-LBNL)
- maintainers: VisIt collaborators
(LBNL: reader plugin contribution by M Lobet @xxirii, ORNL: mainlined by D Pugmire @dpugmire)
- status:
- 3.1.0+: implemented (HDF5 reader for base standard: 1.0.0-1.1.0)
- note: needs renaming of `.h5` files for detection to `.opmd`
- future: generalize to openPMD-api reader (ADIOS, HDF5, JSON)
- [ParaView](https://www.paraview.org/) (Kitware, `third party`)
- domain: analysis and visualization
- [repository](https://gitlab.kitware.com/paraview/paraview) (BSD-3-Clause)
- maintainers: Kitware
(reader plugin contribution by B Geveci @berkgeveci and A Huebl @ax3l)
- status:
- 5.9+: implemented an openPMD-api reader plugin (ADIOS, HDF5, JSON) for base standard (particles & 3D meshes)
- 5.10+: added support for 1D and 2D meshes
- note: needs a helper text file ending on `.pmd` containing a line with the openPMD-api Series filename, e.g. `"data_%T.bp"`
- [VisualPIC](https://github.com/AngelFP/VisualPIC) (DESY, Germany)
- domain: high-level Python API (+GUI) for data analysis and interactive 2D/3D visualization
- [repository](https://github.com/AngelFP/VisualPIC) (GPLv3+)
- maintainer: A Ferran Pousa @AngelFP
- status: implemented (reads data via openPMD-viewer)
- [postpic](https://github.com/skuschel/postpic) (U Jena, Germany)
- domain: post-processing and visualization tool for particle-in-cell data
- [repository](https://github.com/skuschel/postpic) (GPLv3+)
- maintainer: S Kuschel @skuschel
- status: implemented (HDF5 reader for base standard + ED-PIC)
- [PlasmaPy](https://www.plasmapy.org) ([Members](https://www.plasmapy.org/acknowledging), `third party`)
- domain: plasma physics analysis
- [repository](https://github.com/PlasmaPy/plasmapy) (BSD-3-Clause)
- maintainers: Nick Murphy @namurphy, Dominik Stańczak @StanczakDominik et al.
(reader implemented by Ritiek Malhotra @ritiek)
- status:
- 0.2.0+: implemented (HDF5 reader for base standard: 1.0.0-1.0.1)
- [APtools](https://github.com/AngelFP/APtools) (DESY, Germany)
- domain: ollection of tools for accelerator physics
- [repository](https://github.com/AngelFP/APtools) (GPLv3+)
- maintainer: A Ferran Pousa @AngelFP
- status: implemented (read/write particle distributions following the base standard)
- [pyVisOS](https://github.com/UCLA-Plasma-Simulation-Group/pyVisOS) (UCLA, USA)
- domain: post-processing and visualization tool for particle-in-cell data
- [repository](https://github.com/UCLA-Plasma-Simulation-Group/pyVisOS) (BSD-3-Clause)
- maintainer: H. Wen (@Wen-Han)
- status: implemented
- [openPMD-beamphysics](https://github.com/ChristopherMayes/openPMD-beamphysics) (SLAC, USA)
- domain: tools for analyzing and viewing particle accelerator data in the openPMD standard, extension beamphysics
- [repository](https://github.com/ChristopherMayes/openPMD-beamphysics) (Apache License 2.0)
- maintainers: C Mayes @ChristopherMayes et al.
- status: implemented (base standard + BeamPhysics)
- [PP Ana](https://git.gsi.de/d.bertini/pp-ana) (GSI)
- domain: parallel python post processor
- [repository](https://git.gsi.de/d.bertini/pp-ana)
- maintainers: Denis Bertini @denisbertini
- status: implemented (base standard)
Note: For third-party frameworks, the general idea is to implement our readers
[upstream](https://en.wikipedia.org/wiki/Upstream_%28software_development%29)
as soon as they are working.
Please check the individual repositories and feel free to contribute.
### Libraries
- [openPMD-api](https://openpmd-api.readthedocs.io/) (HZDR, Germany and LBNL, USA)
- domain: C++ & Python API for writing & reading (BP, HDF5, JSON, ...), serial & parallel (MPI)
- [repository](https://github.com/openPMD/openPMD-api) (LGPLv3+)
- maintainers: F Poeschel @franzpoeschel, A Huebl @ax3l
- status:
- implemented: ADIOS1, ADIOS2, HDF5 and JSON for base standard (1.0.0-1.1.0)
- supersedes our legacy C++ library:
- [libSplash](https://github.com/ComputationalRadiationPhysics/libSplash) (TU Dresden/HZDR, Germany)
- domain: high-level C++ HDF5 library for mesh and particle records
- [repository](https://github.com/ComputationalRadiationPhysics/libSplash) (LGPLv3+)
- maintainers: F Schmitt @f-schmitt-zih, A Huebl @ax3l
- status:
- 1.4.0+: full API available to fulfill the standard (read+write)
- [Fortran openPMD writer](https://github.com/UCLA-Plasma-Simulation-Group/Fortran-OpenPMD-File-Writers) (UCLA, USA)
- domain: Fortran 2003 HDF5 File Writers in openPMD Standard
- [repository](https://github.com/UCLA-Plasma-Simulation-Group/Fortran-OpenPMD-File-Writers) (UCLA-NC)
- maintainer: Weiming An @caozigao
- status: openPMD 1.0 implemented
- [openPMD-CCD](https://github.com/openPMD/openPMD-CCD) (LBNL, USA)
- domain: A Python Module + LabView bindings for Storing CCD Images with openPMD
- [repository](https://github.com/openPMD/openPMD-CCD) (BSD-3-Clause-LBNL)
- maintainers: A Huebl @ax3l, Anthony Gonsalves @ag6520
- status:
- implemented: HDF5 for base standard (1.0.0-1.1.0)
- [HDF5](https://www.hdfgroup.org/HDF5/) (`third party`)
- domain: libraries for reading & writing the HDF5 format C/C++/Fortran
- maintainer: HDF Group
- [ADIOS](https://www.olcf.ornl.gov/center-projects/adios/) (ORNL, United States; `third party`)
- domain: libraries for reading & writing the HDF5 format C/C++/Fortran/Java/Python
- [repository](https://github.com/ornladios/ADIOS) (BSD-3-Clause-DOE)
- maintainers: N Podhorszki @pnobert, S Klasky @sklasky at al.
- [h5py](http://www.h5py.org/) (`third party`)
- domain: python bindings for HDF5
- [repository](https://github.com/h5py/h5py)
- maintainer: A Collette @andrewcollette et al.
### Tools & Converters
Please be aware that *all existing tools* for general file handling
(HDF5, ADIOS, ...) are also usable with openPMD flavoured files!
A non-complete list of third party software for your consideration:
- openPMD-validator (HZDR, LBNL)
- domain: scripts and python module to validate files according to the `openPMD standard`
- [repository](https://github.com/openPMD/openPMD-validator) (ISC)
- maintainers: A Huebl @ax3l, R Lehe @RemiLehe
- status: implemented (base standard + ED-PIC)
- openPMD-updater (HZDR, LBNL)
- domain: scripts and python module to update openPMD files to newer versions of the `openPMD standard`
- [repository](https://github.com/openPMD/openPMD-updater) (ISC)
- maintainers: A Huebl @ax3l, R Lehe @RemiLehe
- status: currently implementing update routines for openPMD 1.0/1.1 to (upcoming) openPMD 2.0
- openPMD-converter
- domain: copy converters from and to openPMD, e.g. for tools/frameworks/applications without native openPMD support
- [repository](https://github.com/openPMD/openPMD-converter)
- maintainers: various
- openPMD-resampler (ELI-NP)
- domain: Particle down-sampling and phase space visualization tools for post-processing in GEANT4/GPT/Wake-T etc.
- [repository](https://github.com/berceanu/openPMD-Resampler)
- maintainers: A Berceanu @berceanu
- [HDF Compass](https://github.com/HDFGroup/hdf-compass) (HDF Group; `third party`)
- domain: viewer for HDF5 and related formats
- [repository](https://github.com/HDFGroup/hdf-compass) (BSD-3-Clause-HDF)
- [development repository](https://github.com/ComputationalRadiationPhysics/hdf-compass)
(our fork for ADIOS support)
- maintainer: HDF Group (HZDR: ADIOS reader contribution by @michaelsippel)
- status: HZDR implemented an
[ADIOS reader](https://github.com/ComputationalRadiationPhysics/hdf-compass)
- [HDFView](https://www.hdfgroup.org/products/java/hdfview/) (HDF Group; `third party`)
- domain: viewer for HDF5
- maintainer: HDF Group
- [download](https://www.hdfgroup.org/products/java/hdfview/) (BSD-3-Clause-HDF)
- HDF5 command line tools (HDF Group; `third party`)
- domain: HDF5 file handling
- maintainer: HDF Group
- examples: `h5ls`, `h5dump`, `h5diff`, `h5repack`, `gif2h5`, ...
- ADIOS command line tools (ORNL, United States; `third party`)
- domain: ADIOS file handling
- maintainers: N Podhorszki @pnorbert, S Klasky @sklasky et al.
- examples: `bpls`, `bpdump`, `bpdiff`, `bp2bp`, `bp2h5`, ...
- [png2gas](https://github.com/ComputationalRadiationPhysics/picongpu/tree/master/src/tools/png2gas) (HZDR, Germany)
- domain: convert a 2D png image into a 3D density profile,
useful for particle-in-cell simulations
- [repository](https://github.com/ComputationalRadiationPhysics/picongpu/tree/master/src/tools/png2gas) (GPLv3+)
- maintainer: originally by PIConGPU team
- status: [needs adjustments for openPMD 1.0.0](https://github.com/ComputationalRadiationPhysics/picongpu/issues/1446)