https://github.com/ortanav2/neuron-formation-simulator

Simple Neuron Formation Simulation with Thresholds and Settings. Feature Update: Neuronal Interaction Data
https://github.com/ortanav2/neuron-formation-simulator

biology neuron-simulator neuroscience simulation

Last synced: 26 days ago
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Simple Neuron Formation Simulation with Thresholds and Settings. Feature Update: Neuronal Interaction Data

• Host: GitHub
• URL: https://github.com/ortanav2/neuron-formation-simulator
• Owner: ortanaV2
• License: mit
• Created: 2023-10-20T19:21:08.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2024-05-13T17:47:51.000Z (8 months ago)
• Last Synced: 2024-05-13T19:03:03.906Z (8 months ago)
• Topics: biology, neuron-simulator, neuroscience, simulation
• Language: Python
• Homepage: https://www.youtube.com/@git-commit
• Size: 146 KB
• Stars: 7
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md

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README

        
# Neuron Formation Simulator

![](https://github.com/ortanaV2/Neuron-Formation-Simulator/blob/main/PreviewPicture.png?raw=true)

Video about the Project: https://youtu.be/JZToyWf-heQ 

## Settings and Thresholds

- Mutation_threshold = (d)10 *"Controlls the randomness of the nucleus for a mutation in the sector"*

- Calculation_speed = (d)250 *"Time sleep for the iteration interval (in ms)"*

- Dendrite_formation_speed = (d)2 *"Controlls the growth chance of the dendrite picking a free coordinate"*

- Dendrite_formation_threshold = (d)0.97 *"Controlls the energy loss percentage per dendrite grown"*

- Nucleus_expansion = (d)True *"Decides if simulation is allowed to expand exponentially"*

- Branching = (d)False *"Decides if the dendrites are branching"*

  

## Tempset

With defining a cell in the tempset, you are able to create starting cells.

`[(x, y), structure_type, tribe, origin, energy]`

`[(int, int), char, str, int, double]`

### Structure types

> _Defines the part of the cell_

N = Nucleus (Core)

D = Dendrite (Receiver)

T = Terminal (ConnectionPoint)

S = Soma (Cell-Body)

### Tribe

> _Differentiates the branch of a dendrite_

Tribe codex example: "FQ3C"

### Origin

> _Distinguishes the individual neurons_

### Energy

> _Controlls the structure expansion_