https://github.com/pachterlab/kallistobustools
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
https://github.com/pachterlab/kallistobustools
bustools kallisto rna-seq single-cell
Last synced: 7 months ago
JSON representation
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
- Host: GitHub
- URL: https://github.com/pachterlab/kallistobustools
- Owner: pachterlab
- License: mit
- Created: 2019-06-13T03:22:17.000Z (almost 7 years ago)
- Default Branch: master
- Last Pushed: 2022-06-19T19:31:14.000Z (almost 4 years ago)
- Last Synced: 2025-02-15T00:18:59.119Z (over 1 year ago)
- Topics: bustools, kallisto, rna-seq, single-cell
- Homepage: https://kallistobus.tools/
- Size: 124 MB
- Stars: 117
- Watchers: 18
- Forks: 29
- Open Issues: 26
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
- awesome-single-cell - kallistobustools - kallisto | bustools workflow for pre-processing single-cell RNA-seq data. (Tutorials and workflows / Spatial transcriptomics)
README
# kallistobustools
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
Please visit https://kallistobus.tools for tutorials on how to process single-cell RNA-seq data.
## Contributing
Create a Google Colab notebook and make a pull request. If approved `your_tutorial.ipynb` will be added to a new folder `tutorials/docs/tutorials/your_tutorial_folder/{python,R}`.
You will also need to make a pull request to add a reference to your tutorial in the `mkdocs.yml` file. For example:
```yaml
- Tutorials:
- Your Tutorial Name:
- Python: tutorials/your_tutorial_folder/{python,R}/your_tutorial.md
```
*Note*: tutorials will either be in python or R, so paths should be written as `tutorials/your_tutorial_folder/R/your_tutorial.md` for example.