https://github.com/pacificcommunity/ofp-sam-yft-review-analysis

Analyses related to the YFT review
https://github.com/pacificcommunity/ofp-sam-yft-review-analysis

Last synced: about 1 month ago
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Analyses related to the YFT review

• Host: GitHub
• URL: https://github.com/pacificcommunity/ofp-sam-yft-review-analysis
• Owner: PacificCommunity
• Created: 2022-06-08T03:13:20.000Z (almost 3 years ago)
• Default Branch: main
• Last Pushed: 2023-05-02T04:30:44.000Z (about 2 years ago)
• Last Synced: 2023-10-22T01:10:19.099Z (over 1 year ago)
• Language: R
• Homepage:
• Size: 16.5 MB
• Stars: 0
• Watchers: 5
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# YFT Review Analysis

1. Plot both 2017 and 2020 diagnostic, as a starting point for stepwise analysis

2. Share stepwise findings with colleagues

3. Create a doitall that runs the 2020 diagnostic

   * find R analyses required

   * interleave MFCL and R calls

4.  Send 2020 diagnostic run to John

    * converting it to catch conditioning

5. Make sure we can run the 2017 diagnostic

6. From the 2017 diagnostic, run one-off steps:

   * 2017 diagnostic + selectivities

   * 2017 diagnostic + otoliths

   * 2017 diagnostic + tags

   * 2017 diagnostic + age10

7. From the 2017 diagnostic, run combinations:

   * selectivities + otoliths + tags

8. From the 2017 diagnostic, run new selectivity options:

   * intermediate steps, e.g., between diagnostic and selectivities

   * think of alternative ways to model the selectivities

9. Tease apart the CondAge stepwise model run:

   * otoliths

   * catchability constant between seasons

   * catchability constant between years

   * maturity not converted to age

10. Ask how to change regional structure