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https://github.com/papis/papis-zotero

Zotero compatibility layer for papis
https://github.com/papis/papis-zotero

bibtex crossref papers papis publications scihub zotero

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Zotero compatibility layer for papis

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README 

        
|pypi| |ci|



Zotero compatibility for Papis

==============================



Installation

------------



Pip

^^^



To install the latest release from PyPI



.. code:: bash



    python -m pip install papis-zotero



To install the latest development version



.. code:: bash



    python -m pip install papis-zotero@https://github.com/papis/papis-zotero.git#egg=papis-zotero



Nix

^^^



For Nix and NixOS users, a Nix flake is included in this repository and can be

used to install the package. There are many ways of doing so, for instance like so:



.. code:: nix



    {

      pkgs,

      inputs,

      ...

    }: {

      home.packages = with pkgs; [

        (

          python3.withPackages

          (

            ps: [

              inputs.papis.packages.${system}.default

              inputs.papis-zotero.packages.${system}.default

              # you can add other packages you might want to make available for papis

              # ps.jinja2

            ]

          )

        )

        # Here you can list other packages, such as

        # typst

        # hayagriva

        # zotero_7

      ];

    }



Arch

^^^^



Arch users can use the AUR to install `the package

`__.



Importing from Zotero SQLite (preferred)

----------------------------------------



Zotero also maintains a database of all its files and collections under a

``zotero.sqlite`` file. You can check where this file is located by going to

``Edit > Preferences > Advanced > Data Directory Location`` (may vary depending

on the Zotero version). The Zotero data directory should contain the ``zotero.sqlite``

file and a ``storage`` directory with the files for each document.



The SQLite database maintained by Zotero can be imported directly (without

using a BibTeX export) by ``papis-zotero``. This can be done with:



.. code:: bash



  papis zotero import --from-sql-folder 



Here, ``ZOTERO_DATA_DIRECTORY`` is the folder containing the ``zotero.sqlite``

file. By default, ``papis-zotero`` will add the imported documents to your

current library directory, but it can be customized using the

``--outfolder`` argument.



Importing from BibTeX (alternative)

-----------------------------------



Zotero can export different variants of BibTeX or BibLaTeX files

(from ``Files > Export Library``). You could import the resulting ``.bib`` file

directly with Papis (with the ``papis bibtex`` command), but ``papis-zotero``

provides a specialised command. This command has better support for special Zotero

fields. To import a given exported library run:



.. code:: bash



    papis zotero import --from-bibtex library.bib



BibTeX files exported by Zotero can include attached files as shown in the below

example:



.. code:: bibtex



    @article{Einstein1905Photon,

        author = { A. Einstein },

        doi = { 10.1002/andp.19053220607 },

        journal = { Ann. Phys. },

        pages = { 132--148 },

        title = { Über einen die Erzeugung und Verwandlung des Lichtes

            betreffenden heuristischen Gesichtspunkt },

        file = { Full Text:path/to/some/relative/file.pdf },

        volume = { 322 },

        year = { 1905 },

    }



Given this, ``papis-zotero`` will interpret the path of the ``file`` entry

as a relative path to the ``library.bib`` passed to the import command using

``--from-bibtex``. The files are skipped if they do not exist at the expected

location.



By default, ``papis-zotero`` will add the documents to your current library.

When initially importing a big library, it is recommended to always import it

into a scratch folder, so that you can verify the import. This can be easily done

using:



.. code:: bash



    papis zotero import --from-bibtex library.bib --outfolder some/folder/lib



When you are ready you can move this folder to a final Papis library.



Using Zotero connectors

-----------------------



This plugin can also connect to a Zotero connector browser plugin. First, such

a plugin should be installed from the

`Zotero website `__. Then, make sure that

Zotero itself is not running (and connected to the connector) and run:



.. code:: bash



    papis zotero serve



Papis now starts listening to your browser for incoming data. Whenever you click the

Zotero button to add a paper, ``papis-zotero`` will add this paper to the Papis

library instead.



Development

-----------



This project uses ``pyproject.toml`` and ``hatchling`` for its build system.

To develop the code, it is recommended to start up a

`virtual environment `__ and

install the project in editable mode using, e.g.::



    python -m pip install -e '.[develop]'



After installation, always check that the command is correctly recognized, e.g.

by looking at the help output



.. code:: bash



    papis zotero --help



If you use the Nix flake, you can also use the included ``devShell`` with

``nix develop``.



.. |pypi| image:: https://badge.fury.io/py/papis-zotero.svg

   :target: https://badge.fury.io/py/papis-zotero

.. |ci| image:: https://github.com/papis/papis-zotero/workflows/CI/badge.svg

   :target: https://github.com/papis/papis-zotero/actions?query=branch%3Amain+workflow%3ACI