Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

Awesome Lists | Featured Topics | Projects

https://github.com/pat-s/science-apps

Apps for getting things done in science
https://github.com/pat-s/science-apps

Last synced: 9 days ago
JSON representation

Apps for getting things done in science

Host: GitHub
URL: https://github.com/pat-s/science-apps
Owner: pat-s
Created: 2019-05-27T18:55:21.000Z (over 5 years ago)
Default Branch: master
Last Pushed: 2019-05-30T07:57:08.000Z (over 5 years ago)
Last Synced: 2024-10-11T18:18:05.457Z (about 1 month ago)
Size: 2.93 KB
Stars: 16
Watchers: 4
Forks: 0
Open Issues: 0
Metadata Files:
- Readme: README.md

Awesome Lists containing this project

README

        # science-apps

Apps for getting things done in science.

This is an opinionated list of apps I use(d) in my daily science work to get things done.

Science is a very diverse field and it is not easy to get and keep an overview of tools that simplify certain tasks.

It is worth mentioning that this list is biased towards a terminal based UNIX workflow using R.

Have fun exploring all tools listed here.

[pat-s/dotfiles](https://github.com/pat-s/dotfiles)

# Browsers

- [Brave](https://brave.com/)

- [Chromium](https://www.chromium.org/Home)

- [Firefox](https://www.mozilla.org/en-US/firefox/new/)

- [Vivaldi](https://vivaldi.com/)

* [Coding](#coding)

# Coding

## IDEs

- [RStudio](https://github.com/rstudio/rstudio)

- [Visual Studio Code](https://code.visualstudio.com/)

## R related tools

- [colorout](https://github.com/jalvesaq/colorout)

- [radian](https://github.com/randy3k/radian)

- [startup](https://github.com/HenrikBengtsson/startup)

  * [IDEs](#ides)

# File Managers

- [Dolphin](https://userbase.kde.org/Dolphin)

- [SpaceFM](https://ignorantguru.github.io/spacefm/)

- [nnn](https://github.com/jarun/nnn)

- [ranger](https://github.com/ranger/ranger)

  * [R related tools](#r-related-tools)

# GNU/Linux

- [ArchLabs](https://archlabslinux.com/)

- [dmenu](https://suckless.org/)

- [i3](https://i3wm.org/)

- [sway](https://github.com/swaywm/sway)

- [Waybar](https://github.com/Alexays/Waybar)

* [File Managers](#file-managers)

# Image Viewers

- [imv](https://github.com/eXeC64/imv)

- [sxiv](https://github.com/muennich/sxiv)

- [xnviewmp](https://www.xnview.com/en/xnviewmp/)

* [GNU/Linux](#gnulinux)

# Notes

- [Boostnote](https://github.com/BoostIO/Boostnote)

- [Notable](https://github.com/notable/notable)

- [Notion](https://www.notion.so)

* [Image Viewers](#image-viewers)

# Mail

- [Mailspring](https://github.com/Foundry376/Mailspring)

- [Neomutt](https://neomutt.org/)

- [Thunderbird](https://www.thunderbird.net/en-US/)

* [Notes](#notes)

# PDF Reader

- [Evince](https://wiki.gnome.org/Apps/Evince)

- [Okular](https://okular.kde.org/)

- [Zathura](https://pwmt.org/projects/zathura)

* [Mail](#mail)

# Presentations

- [impressive](http://impressive.sourceforge.net/)

- [xaringan](https://github.com/yihui/xaringan)

* [PDF Reader](#pdf-reader)

# Reference Managers

- [Jabref](https://github.com/JabRef/jabref)

- [Zotero](https://www.zotero.org/)

* [Presentations](#presentations)

# Reproducible Research

- [docker](https://www.docker.com/) / [rocker](https://www.rocker-project.org/) (R package)

## R Packages

Another excellent compilation: https://github.com/jdblischak/r-project-workflows

- [containerit](https://github.com/o2r-project/containeRit)

- [drake](https://github.com/ropensci/drake)

- [packrat](https://github.com/rstudio/packrat)

- [redoc](https://github.com/noamross/redoc)

- [rrtools.addin](https://github.com/nevrome/rrtools.addin)

- [rrtools](https://github.com/benmarwick/rrtools)

- [rticles](https://github.com/rstudio/rticles)

- [workflowr](https://github.com/jdblischak/workflowr)

## Data Storages

- [Mendeley Data](https://data.mendeley.com/)

- [Zenodo](https://zenodo.org/)

* [Reference Managers](#reference-managers)

# Task Management / Organization

- [Gitea](https://github.com/go-gitea/gitea)

- [mattermost](https://mattermost.com/)

- [organize](https://github.com/tfeldmann/organize)

- [Slack](https://slack.com/intl/en-de/)

- [Todoist](https://todoist.com)

- [yadm](https://yadm.io/)

* [Reproducible Research](#reproducible-research)

# Terminal related

- [byobu](http://www.byobu.co/)

- [fish](https://fishshell.com/)

- [MobaXterm](https://mobaxterm.mobatek.net/) (Windows only)

- [neovim](https://neovim.io/)

- [nnn](https://github.com/jarun/nnn)

- [rofi](https://github.com/davatorium/rofi)

- [st](https://github.com/LukeSmithxyz/st)

- [Tilix](https://github.com/gnunn1/tilix)

- [.tmux](https://github.com/gpakosz/.tmux)

- [tmux](https://github.com/tmux/tmux)

- [tmuxinator](https://github.com/tmuxinator/tmuxinator)

  * [R Packages](#r-packages)

# Writing

- [LibreOffice](https://www.libreoffice.org/)

- [Typora](https://typora.io/)

## LaTeX

- [arara](https://github.com/cereda/arara)

- [latex-workshop](https://github.com/James-Yu/LaTeX-Workshop) (VScode plugin)

- [vimtex](https://github.com/lervag/vimtex) (Vim Plugin)

## Review

- [Dochub](https://dochub.com/)

- [Overleaf](https://www.overleaf.com/)

  * [Data Storages](#data-storages)

# Apps to avoid

- Windows Operating System

- Microsoft Word

- Microsoft Powerpoint

- [PuTTY](https://putty.org/)

* [Task Management / Organization](#task-management--organization)

* [Terminal related](#terminal-related)

* [Writing](#writing)

  * [LaTeX](#latex)

  * [Review](#review)

* [Apps to avoid](#apps-to-avoid)