https://github.com/pblischak/polyploid-demography

Demographic Inference in Polyploids
https://github.com/pblischak/polyploid-demography

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Demographic Inference in Polyploids

• Host: GitHub
• URL: https://github.com/pblischak/polyploid-demography
• Owner: pblischak
• Created: 2020-01-24T17:36:33.000Z (over 5 years ago)
• Default Branch: main
• Last Pushed: 2023-07-08T21:23:29.000Z (almost 2 years ago)
• Last Synced: 2025-03-24T09:46:50.946Z (3 months ago)
• Language: Python
• Homepage: http://polyploid-demography.rtfd.io/
• Size: 3.76 MB
• Stars: 5
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
[![Documentation Status](https://readthedocs.org/projects/polyploid-demography/badge/?version=latest)](https://polyploid-demography.readthedocs.io/en/latest/?badge=latest)

# Demographic Inference in Polyploids

## [Read the Docs](http://polyploid-demography.rtfd.io/)

This repository hosts all the code for testing models for demographic inference

in polyploid species. The models are implemented in the open-source Python package

[dadi](https://bitbucket.org/gutenkunstlab/dadi).

Each folder corresponds to a different analysis from the accompanying manuscript

(link). More detailed documentation can be found

on our **Read the Docs** website (link above), as well as within the comments of

the scripts in this repository.

> **Note**

> 

> While working on the manuscript we changed the homoeologous exchange parameter

> from $d_{i \leftrightarrow j}$ to $e_{i \leftrightarrow j}$. Because, of this

> some of the code may still have `dij` as a parameter but it represents the

> same thing.

**Preprint information**

Blischak, PD, M Sajan, MS Barker, RN Gutenkunst. 2022. Demographic history

inference and the polyploid continuum. *bioRxiv* doi:

https://doi.org/10.1101/2022.09.15.508148.