https://github.com/pbs-assess/sdmtmbextra

:hammer: Extra tools for working with sdmTMB models
https://github.com/pbs-assess/sdmtmbextra

Last synced: 3 days ago
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:hammer: Extra tools for working with sdmTMB models

• Host: GitHub
• URL: https://github.com/pbs-assess/sdmtmbextra
• Owner: pbs-assess
• Created: 2023-01-26T01:54:47.000Z (almost 2 years ago)
• Default Branch: main
• Last Pushed: 2024-06-18T23:21:04.000Z (7 months ago)
• Last Synced: 2024-11-10T13:28:10.195Z (2 months ago)
• Language: TeX
• Homepage:
• Size: 79.1 KB
• Stars: 3
• Watchers: 13
• Forks: 1
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

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README

        
# sdmTMBextra

[![R-CMD-check](https://github.com/pbs-assess/sdmTMBextra/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/pbs-assess/sdmTMBextra/actions/workflows/R-CMD-check.yaml)

sdmTMBextra is an R package with extra utilities for working with [sdmTMB](https://github.com/pbs-assess/sdmTMB) models. Functionality includes:

- Sampling with MCMC using [rstan](https://CRAN.R-project.org/package=rstan)/[tmbstan](https://CRAN.R-project.org/package=tmbstan)

- Spatial correlation barriers with SPDE meshes based on utilities from INLA

The package was developed to reduce heavier package dependencies within the main [sdmTMB](https://github.com/pbs-assess/sdmTMB) package.

## Installation

You can install sdmTMBextra with:

``` r

# install.packages("remotes")

remotes::install_github("pbs-assess/sdmTMBextra", dependencies = TRUE)

```

See the examples within the help files and the main [sdmTMB vignettes](https://pbs-assess.github.io/sdmTMB/) (under 'Articles').

**Always load the sdmTMBextra package *after* sdmTMB**