https://github.com/pdimens/mimick

Linked-read sequence simulator
https://github.com/pdimens/mimick

fastq genomics genomics-data genomics-simulations linked-reads

Last synced: 6 months ago
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Linked-read sequence simulator

• Host: GitHub
• URL: https://github.com/pdimens/mimick
• Owner: pdimens
• License: gpl-3.0
• Created: 2025-04-08T18:28:50.000Z (9 months ago)
• Default Branch: main
• Last Pushed: 2025-06-20T17:56:04.000Z (6 months ago)
• Last Synced: 2025-06-21T10:07:08.921Z (6 months ago)
• Topics: fastq, genomics, genomics-data, genomics-simulations, linked-reads
• Language: Python
• Homepage: https://pdimens.github.io/mimick/
• Size: 13.4 MB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• awesome-linked-reads - ^1

README

          
# Mimick

Linked-read sequence simulator

![mimick_logo](/docs/_media/mimick_logo.png)

[![gitHub release](https://img.shields.io/github/v/release/pdimens/mimick?style=for-the-badge&logo=anaconda&logoColor=ffffff)](https://github.com/pdimens/mimick/releases)

[![documentation badge](https://img.shields.io/badge/read%20the-docs-daa355?style=for-the-badge&logo=quicklook&logoColor=ffffff)](https://pdimens.github.io/mimick)

Originally known as XENIA from the [VISOR](https://github.com/davidebolo1993/VISOR) project, Mimick is a 

simulator for linked-read FASTQ data. Mimick allows you to simulate an

arbitrary number of haplotypes, set overall coverage, molecule coverage,

and mix-match barcodes with linked-read chemistries.

## Supported Linked-Read Types:

- 10X

- Haplotagging

- stLFR

- TELLseq

### Authors

 [@pdimens](https://github.com/pdimens) (Mimick)

 [@davidebolo1993](https://github.com/davidebolo1993) (VISOR)