https://github.com/pditommaso/containers-poc

Proof of concept mirroring containers to different registries
https://github.com/pditommaso/containers-poc

Last synced: 21 days ago
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Proof of concept mirroring containers to different registries

• Host: GitHub
• URL: https://github.com/pditommaso/containers-poc
• Owner: pditommaso
• License: apache-2.0
• Created: 2024-08-07T15:30:36.000Z (5 months ago)
• Default Branch: master
• Last Pushed: 2024-08-07T17:21:43.000Z (5 months ago)
• Last Synced: 2024-10-15T09:56:12.412Z (2 months ago)
• Language: Nextflow
• Size: 7.81 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# containers-poc

Proof of concept mirroring containers to different registries using [Wave](https://seqera.io/wave/). 

### Description 

The pipeline implements two simple tasks, one using `biocontainers/samtools:v1.7.0_cv4` and the 

other `biocontainers/bamtools:v2.4.0_cv4` 

```

process { withName: 'samtools' { container = 'biocontainers/samtools:v1.7.0_cv4' } }

process { withName: 'bamtools' { container = 'biocontainers/bamtools:v2.4.0_cv4' } }

```

When using the profile `docker` the containers are mirrored in the container registry `docker.io/pditommaso/my-mirror` 

Using the inspect command the following configuration should be shown 

```

» nextflow inspect pditommaso/containers-poc -format config -profile docker

process { withName: 'samtools' { container = 'docker.io/pditommaso/my-mirror:71dbc829e76d46d0' } }

process { withName: 'bamtools' { container = 'docker.io/pditommaso/my-mirror:04243395254c21c7' } }

```

When using the profile `quay` the containers are mirrored in the container registry `quay.io/pditommaso/my-mirror` 

```

» nextflow inspect pditommaso/containers-poc -format config -profile quay

process { withName: 'samtools' { container = 'oras://docker.io/pditommaso/my-mirror:f0cb76eb6a731149' } }

process { withName: 'bamtools' { container = 'oras://docker.io/pditommaso/my-mirror:5433b5af1825115a' } }

```

Note the use of Singularity ORAS protocol in the latter config