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https://github.com/pditommaso/gc-count

Last synced: 21 days ago
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Host: GitHub
URL: https://github.com/pditommaso/gc-count
Owner: pditommaso
Created: 2014-11-02T09:20:49.000Z (about 10 years ago)
Default Branch: master
Last Pushed: 2014-11-02T09:52:01.000Z (about 10 years ago)
Last Synced: 2024-10-15T09:56:14.360Z (2 months ago)
Language: Groovy
Size: 148 KB
Stars: 0
Watchers: 3
Forks: 0
Open Issues: 0
Metadata Files:
- Readme: README.md

Awesome Lists containing this project

README

        A Groovy vs Java benchmark  

============================

A performance comparison between Java a Groovy.

It reads a genome file (~ 1_000_000 lines in a text file) counting G,C,A,T nucleotides 

(i.e. occurrence of that characters).

Result (Mac Book Pro 2.7 GHz Intel Core i7):

Version                   | Time     | count     |

------------------------- | -------- | --------- | 

gc.java                   | 427 ms   | 0.376217  | 

gc_if.groovy (static)     | 2430 ms  | 0.376217  | 

gc_if.groovy (dynamic)    | 5039 ms  | 0.376217  | 

gc_switch.groovy (static) | 19332 ms | 0.376217  |

gc_switch.groovy (dynamic)| 21677 ms | 0.376217  |

gc_array.groovy (static)  | 472 ms   | 0.376217  |

gc_array.groovy (dynamic) | 1590 ms  | 0.376217  |

The chromose file used for this benchmark is available for downlaod at this link ftp://ftp.ensembl.org/pub/release-67/fasta/homo_sapiens/dna/Homo_sapiens.GRCh37.67.dna_rm.chromosome.Y.fa.gz