https://github.com/pearu/iocbio

Automatically exported from code.google.com/p/iocbio
https://github.com/pearu/iocbio

Last synced: 6 months ago
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Automatically exported from code.google.com/p/iocbio

• Host: GitHub
• URL: https://github.com/pearu/iocbio
• Owner: pearu
• License: other
• Created: 2015-08-05T12:16:16.000Z (about 10 years ago)
• Default Branch: master
• Last Pushed: 2015-08-05T12:33:27.000Z (about 10 years ago)
• Last Synced: 2025-04-15T08:59:46.066Z (6 months ago)
• Language: Python
• Size: 2.2 MB
• Stars: 17
• Watchers: 5
• Forks: 3
• Open Issues: 4
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

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README

          
The IOCBio project provides open-source software that is developed in [Laboratory of Systems Biology](http://sysbio.ioc.ee) at [Institute of Cybernetics](http://www.ioc.ee). The project is created to publish the software, this includes distributing the source codes, continuing software development, supporting users as well as attracting users to contribute to the software.

Currently, the project provides access to the following software:

  * [IOCBioMicroscope](IOCBioMicroscope.md) - a Python package for deconvolving 3D microscope images, see [DeconvolutionTutorial](DeconvolutionTutorial.md) for an example, see also [PyLibDeconv](http://code.google.com/p/pylibdeconv).

  * [IOCBioStrathKelvin](IOCBioStrathKelvin.md) - a wrapper to [Strathkelvin Instruments](http://www.strathkelvin.com/) 929 Oxygen System software.

  * [IOCBioSarcomereLength](IOCBioSarcomereLength.md) - a C library and Python package for estimating fundamental period of a sequence with an application to determining sarcomere length from microscopy images of cardiomyocytes.

  * [IOCBioOxygenIsotopeEquationGenerator](IOCBioOxygenIsotopeEquationGenerator.md) - a Python module for generation of mass isotopologue equations.

which are parts of the IOCBio package. See [IOCBio Documentation](http://sysbio.ioc.ee/download/software/iocbio/index.html) and [List of documentations with examples](http://sysbio.ioc.ee/download/software/iocbio/generated/examples.html) for more details.

In addition, we have created several independent software projects that we use together with the IOCBio project:

  * [PyLibNIDAQmx](http://code.google.com/p/pylibnidaqmx/) - a Python wrapper to libnidaqmx library

  * [PyLibTiff](http://code.google.com/p/pylibtiff/) - a Python TIFF library

  * [SympyCore](http://code.google.com/p/sympycore/) - an efficient pure Python Computer Algebra System (originally supported by Simula)

  * [Simple RPC C++](http://code.google.com/p/simple-rpc-cpp) - a simple RPC wrapper generator to C/C++ functions