https://github.com/pepkit/peppy

Project metadata manager for PEPs in Python
https://github.com/pepkit/peppy

bioinformatics metadata metadata-management ngs pipeline-submission-engine

Last synced: 3 months ago
JSON representation

Project metadata manager for PEPs in Python

• Host: GitHub
• URL: https://github.com/pepkit/peppy
• Owner: pepkit
• License: bsd-2-clause
• Created: 2016-05-05T19:20:05.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2025-10-20T18:44:33.000Z (3 months ago)
• Last Synced: 2025-10-21T20:48:23.427Z (3 months ago)
• Topics: bioinformatics, metadata, metadata-management, ngs, pipeline-submission-engine
• Language: Python
• Homepage: https://pep.databio.org/peppy
• Size: 2.95 MB
• Stars: 38
• Watchers: 3
• Forks: 13
• Open Issues: 34
• Metadata Files:
  • Readme: README.md
  • Contributing: docs/contributing.md
  • License: LICENSE.txt
  • Support: docs/support.md

Awesome Lists containing this project

• awesome-python-fa - peppy - سازماندهی پروژه‌های omics و داده‌های زیستی. (زیست شناسی و بیوتکنولوژی / کار با زمان و تقویم)

README

          
# peppy python package

![Run pytests](https://github.com/pepkit/peppy/workflows/Run%20pytests/badge.svg)

[![codecov](https://codecov.io/gh/pepkit/peppy/branch/master/graph/badge.svg)](https://codecov.io/gh/pepkit/peppy)

[![PEP compatible](https://pepkit.github.io/img/PEP-compatible-green.svg)](https://pep.databio.org)

[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)

`peppy` is the official python package for reading **Portable Encapsulated Projects** or **PEP**s in Python.

Links to complete documentation:

* Complete documentation and API for the `peppy` python package is at [peppy.databio.org](https://peppy.databio.org).

* Reference documentation for standard **PEP** format is at [pep.databio.org](https://pep.databio.org/).

* Example PEPs for testing `peppy` are in the [example_peps repository](https://github.com/pepkit/example_peps).

* The package [on PyPI](https://pypi.org/project/peppy/).