https://github.com/petercollingridge/cell-simulation
Python simulation of a single-celled organism
https://github.com/petercollingridge/cell-simulation
biology evolution python python27
Last synced: 6 months ago
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Python simulation of a single-celled organism
- Host: GitHub
- URL: https://github.com/petercollingridge/cell-simulation
- Owner: petercollingridge
- Created: 2010-03-10T10:41:54.000Z (over 15 years ago)
- Default Branch: master
- Last Pushed: 2015-10-04T22:20:56.000Z (about 10 years ago)
- Last Synced: 2025-03-23T19:22:48.723Z (7 months ago)
- Topics: biology, evolution, python, python27
- Language: Python
- Homepage: http://www.petercollingridge.co.uk/cell-simulation
- Size: 900 KB
- Stars: 49
- Watchers: 6
- Forks: 19
- Open Issues: 1
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Metadata Files:
- Readme: README
Awesome Lists containing this project
README
Python simulation of a single-celled organism
Peter Collingridge 2010
> testCell.py
This is the top-level module
* Gives an example of how to create and update cells
* Runs simulation for 48000 units of time
> virtualCell.py
* Defines Solution and Cell classes
* Imports
> biochemistry.py
* Contains all_metabolites list and all_reactions dictionary
* Defines Metabolite, Reaction and Protein classes
> graphDrawer.py
* Takes multiple time series and plots them as an SVG