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https://github.com/petteriteikari/minivess_mlops

Charissa Poon, Petteri Teikari et al. (2023): "A dataset of rodent cerebrovasculature from in vivo multiphoton fluorescence microscopy imaging", Scientific Data 10, 141 doi: 10.1038/s41597-023-02048-8
https://github.com/petteriteikari/minivess_mlops

image-segmentation medical-image-analysis microscopy mlops multiphoton-microscopy segmentation

Last synced: 2 days ago
JSON representation

Host: GitHub
URL: https://github.com/petteriteikari/minivess_mlops
Owner: petteriTeikari
Created: 2023-04-09T18:32:13.000Z (over 1 year ago)
Default Branch: main
Last Pushed: 2023-10-19T12:58:58.000Z (about 1 year ago)
Last Synced: 2023-10-19T14:19:40.263Z (about 1 year ago)
Topics: image-segmentation, medical-image-analysis, microscopy, mlops, multiphoton-microscopy, segmentation
Language: Python
Homepage: http://doi.org/10.1038/s41597-023-02048-8
Size: 440 KB
Stars: 0
Watchers: 1
Forks: 0
Open Issues: 10
Metadata Files:
- Readme: README.md

Awesome Lists containing this project

README

        # MiniVess MLOps

[![Docker (Env)](https://github.com/petteriTeikari/minivess_mlops/actions/workflows/build-env_image.yml/badge.svg)](https://github.com/petteriTeikari/minivess_mlops/actions/workflows/build-env_image.yml)

[![Docker (Jupyter)](https://github.com/petteriTeikari/minivess_mlops/actions/workflows/build-jupyter_image.yml/badge.svg)](https://github.com/petteriTeikari/minivess_mlops/actions/workflows/build-jupyter_image.yml)

[![Docker (Train)](https://github.com/petteriTeikari/minivess_mlops/actions/workflows/build_train_image.yml/badge.svg)](https://github.com/petteriTeikari/minivess_mlops/actions/workflows/build_train_image.yml)


[![Test EE (Data)](https://github.com/petteriTeikari/minivess_mlops/actions/workflows/test_dataload.yml/badge.svg)](https://github.com/petteriTeikari/minivess_mlops/actions/workflows/test_dataload.yml)

[![Test EE (Train)](https://github.com/petteriTeikari/minivess_mlops/actions/workflows/test_train.yml/badge.svg)](https://github.com/petteriTeikari/minivess_mlops/actions/workflows/test_train.yml)

_(in-progress)_ MLOPS for more end-to-end reproducible pipeline for the dataset published in the article:

Charissa Poon, Petteri Teikari _et al._ (2023):

"A dataset of rodent cerebrovasculature from in vivo multiphoton fluorescence microscopy imaging",

Scientific Data 10, 141 doi: [10.1038/s41597-023-02048-8](https://doi.org/10.1038/s41597-023-02048-8) see also: [Dagshub](https://dagshub.com/petteriTeikari/minivess_mlops)

## Wiki

See some background for decisions, and tutorials: https://github.com/petteriTeikari/minivess_mlops/wiki

## TODO!

See cards on [Github Projects](https://github.com/users/petteriTeikari/projects/2)