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https://github.com/pharmaverse/admiralonco
Oncology extension package for ADaM in R Asset Library (admiral)
https://github.com/pharmaverse/admiralonco
Last synced: 3 months ago
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Oncology extension package for ADaM in R Asset Library (admiral)
- Host: GitHub
- URL: https://github.com/pharmaverse/admiralonco
- Owner: pharmaverse
- License: other
- Created: 2022-02-21T10:17:07.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2023-12-21T10:49:49.000Z (11 months ago)
- Last Synced: 2024-01-09T15:03:50.971Z (10 months ago)
- Language: R
- Homepage: https://pharmaverse.github.io/admiralonco/index.html
- Size: 11.5 MB
- Stars: 23
- Watchers: 7
- Forks: 8
- Open Issues: 4
-
Metadata Files:
- Readme: README.md
- License: LICENSE.md
Awesome Lists containing this project
- jimsghstars - pharmaverse/admiralonco - Oncology extension package for ADaM in R Asset Library (admiral) (R)
README
# admiralonco 
[
](https://pharmaverse.org)
[](https://CRAN.R-project.org/package=admiralonco)
Oncology extension package for ADaM in R Asset Library `{admiral}`
## Purpose
To provide a complementary (to `{admiral}`) toolbox that enables users
to develop oncology disease area specifics.
## Installation
The package is available from CRAN and can be installed with:
```r
install.packages("admiralonco")
```
To install the latest development version of the package directly from
GitHub use the following code:
```r
if (!requireNamespace("remotes", quietly = TRUE)) {
install.packages("remotes")
}
remotes::install_github("pharmaverse/admiraldev") # This is a required dependency of {admiralonco}
remotes::install_github("pharmaverse/admiral") # This is a required dependency of {admiralonco}
remotes::install_github("pharmaverse/admiralonco")
```
### Dependencies
The latest version of the package works with the latest versions of the
packages stated in `DESCRIPTION`.
If a previous version of the package should be used, it is recommended
to use latest version of the dependencies at the point of time when the
previous version of {admiralonco} was released. For example, admiralonco
0.3.0 was released on 2023-03-14. I.e., it will work with the latest
version of packages available at that date, e.g., admiral 0.10.
## Scope
- Build a toolbox of re-usable functions and utilities to create
oncology-specific ADaM datasets in R in a modular manner.
- All functions are created based upon the ADaM Implementation Guide
and aim to facilitate the programming of ADaM dataset standards.
- Initially the package will focus on the most common efficacy
endpoint needs for solid tumor (using RECIST v1.1 response
criteria), but over time we will look to add extra areas such as:
endpoints for targeted indications, baseline disease
characteristics, common sensitivity analyses and questionnaires.
## Expectations
`{admiralonco}` is expected to complement `{admiral}` and provide
functions to help with the creation of the efficacy endpoints required
for oncology ADaMs.
## References and Documentation
- Please refer to the [References and
Documentation](https://pharmaverse.github.io/admiral/index.html#references-and-documentation)
## R Versions
Here's a summary of our strategy for this package related to R versions:
- R versions for developers and users will follow the same as
`{admiral}` core package.
- For development the `main` branch of `{admiral}` core is used as a
dependency. For releasing a new `{admiralonco}` version it must run
using the latest released `{admiral}` core version.
## Contact
We use the following for support and communications between user and
developer community:
- [Slack](https://pharmaverse.slack.com/) - for
informal discussions, Q&A and building our user community. If you
don't have access, use this
[link](https://join.slack.com/t/pharmaverse/shared_invite/zt-yv5atkr4-Np2ytJ6W_QKz_4Olo7Jo9A)
to join the pharmaverse Slack workspace
- [GitHub Issues](https://github.com/pharmaverse/admiralonco/issues) -
for direct feedback, enhancement requests or raising bugs