https://github.com/phydev/supertreat_api
SuPerTreat prediction models API
https://github.com/phydev/supertreat_api
Last synced: about 1 year ago
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SuPerTreat prediction models API
- Host: GitHub
- URL: https://github.com/phydev/supertreat_api
- Owner: phydev
- License: mit
- Created: 2023-08-29T12:28:07.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2023-09-01T08:20:00.000Z (almost 3 years ago)
- Last Synced: 2025-01-22T10:11:29.651Z (over 1 year ago)
- Language: Python
- Size: 24.4 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# SuPerTreat - Prediction Models API
This repository contains the API developed in the project EraPerMed project [_Supporting Personalized Treatment Decisions in Head and Neck Cancer through Big Data_](https://www.era-learn.eu/network-information/networks/era-permed/personalised-medicine-multidisciplinary-research-towards-implementation/supporting-personalized-treatment-decisions-in-head-and-neck-cancer-through-big-data) to retrieve clinical predictions for Head and Neck cancer patients. The API provides predictions for 6 clinical scenarios:
1. Base model only with clinical variables (without gene expression)
2. Gene signature model for HPV-Negative patients
3. Gene signature model for HPV-Positive patients
4. Gene signature model for radiosensitivity
5. Gene signature model for Platinum-based chemosensitivity in loco-regionally advanced disease
6. Gene signature model for Cetuximab-sensitivity in loco-regionally advanced disease
The prediction models behind this API were developed in the Oslo Centre for Biostatistics and Epidemiology (OCBE) at the University of Oslo, Norway.
## Files
| file | description |
| --- | --- |
| [src/app.py](https://github.com/phydev/supertreat_api/blob/main/src/app.py) | Python Flask API |
| [src/models.yml](https://github.com/phydev/supertreat_api/blob/main/src/models.yml) | SWAGGER definition |