https://github.com/pierrebarrat/treeknit.jl

TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).
https://github.com/pierrebarrat/treeknit.jl

arg phylogeny reassortment recombination

Last synced: 10 months ago
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TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).

• Host: GitHub
• URL: https://github.com/pierrebarrat/treeknit.jl
• Owner: PierreBarrat
• License: mit
• Created: 2019-05-17T15:53:09.000Z (about 7 years ago)
• Default Branch: master
• Last Pushed: 2025-02-18T15:54:20.000Z (over 1 year ago)
• Last Synced: 2025-06-18T11:07:03.454Z (12 months ago)
• Topics: arg, phylogeny, reassortment, recombination
• Language: Julia
• Homepage:
• Size: 2.68 MB
• Stars: 14
• Watchers: 1
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
[![](https://img.shields.io/badge/docs-stable-blue.svg)](https://pierrebarrat.github.io/TreeKnit.jl)

# TreeKnit

TreeKnit is a Julia package that performs the inference of Ancestral Reassortment Graph for segmented genomes (typically, human influenza). 

Documentation is available [here](https://pierrebarrat.github.io/TreeKnit.jl).  

The complete description of the algorithm is available at

> TreeKnit: Inferring Ancestral Reassortment Graphs of influenza viruses   

> Pierre Barrat-Charlaix, Timothy G. Vaughan, Richard A. Neher

> bioRxiv 2021.12.20.473456; doi: https://doi.org/10.1101/2021.12.20.473456

Please cite this article if you use TreeKnit!