https://github.com/pinellolab/simstpy
A framework for simulation of spatially-resolved omics data using python
https://github.com/pinellolab/simstpy
atac-seq cite-seq cut-tag-seq multi-omics rna-seq simulation spatial
Last synced: 29 days ago
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A framework for simulation of spatially-resolved omics data using python
- Host: GitHub
- URL: https://github.com/pinellolab/simstpy
- Owner: pinellolab
- License: mit
- Created: 2023-02-24T20:32:34.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-02-22T06:16:47.000Z (over 1 year ago)
- Last Synced: 2025-07-03T14:46:53.269Z (3 months ago)
- Topics: atac-seq, cite-seq, cut-tag-seq, multi-omics, rna-seq, simulation, spatial
- Language: Jupyter Notebook
- Homepage:
- Size: 7.13 MB
- Stars: 2
- Watchers: 1
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Simstpy
Simulation of spatially-resolved omics data in python.
# Installation
You can clone the repo. and install it by
```shell
git clone git@github.com:pinellolab/simstpy.git
cd simstpy
pip install ./
```
# Examples
We provide a notebook to demonstrate how to generate simulate data based on [covariance](https://github.com/pinellolab/simstpy/blob/main/notebooks/01_simulation_with_covariance.ipynb).