https://github.com/pirovc/grimer

GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.
https://github.com/pirovc/grimer

amplicon bokeh contamination dashboard interactive-visualizations metagenomics microbiome visualization

Last synced: 27 days ago
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GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.

• Host: GitHub
• URL: https://github.com/pirovc/grimer
• Owner: pirovc
• License: mit
• Created: 2021-06-02T13:13:21.000Z (almost 5 years ago)
• Default Branch: main
• Last Pushed: 2023-02-06T18:13:14.000Z (about 3 years ago)
• Last Synced: 2023-08-04T13:10:02.747Z (over 2 years ago)
• Topics: amplicon, bokeh, contamination, dashboard, interactive-visualizations, metagenomics, microbiome, visualization
• Language: Python
• Homepage: https://pirovc.github.io/grimer/
• Size: 5.37 MB
• Stars: 11
• Watchers: 2
• Forks: 2
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

          
![GRIMER](grimer/img/logo.png)

GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection. 

- [Installation, user manual](https://pirovc.github.io/grimer/)

- [Live examples](https://pirovc.github.io/grimer/examples/)

- [Pre-print](https://doi.org/10.1101/2021.06.22.449360)

![recording-(2)5](https://user-images.githubusercontent.com/4673375/211857099-c9492232-c5f8-444e-aa68-70d6db8c82b4.gif)

## Powered by

[](https://bokeh.org)

[](https://pandas.org)

[](https://scipy.org)

[](https://scikit-bio.org)