https://github.com/plger/sechm

Wrapper around ComplexHeatmap for SummarizedExperiment objects
https://github.com/plger/sechm

Last synced: 15 days ago
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Wrapper around ComplexHeatmap for SummarizedExperiment objects

• Host: GitHub
• URL: https://github.com/plger/sechm
• Owner: plger
• Created: 2021-04-08T15:51:05.000Z (over 3 years ago)
• Default Branch: master
• Last Pushed: 2024-06-12T16:57:02.000Z (5 months ago)
• Last Synced: 2024-06-13T23:28:21.385Z (5 months ago)
• Language: R
• Size: 264 KB
• Stars: 5
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# sechm

**Pierre-Luc Germain, 08.04.2021**

*D-HEST Institute for Neurosciences, ETH Zürich & Laboratory of Statistical Bioinformatics, University Zürich*

***

The *sechm* package is essentially a convenient wrapper around the 

*[ComplexHeatmap](https://jokergoo.github.io/ComplexHeatmap-reference/book/)* 

engine, facilitating the creation of heatmaps from 

*[SummarizedExperiment](https://bioconductor.org/packages/3.10/SummarizedExperiment)*

objects. This was formerly part of the [SEtools](https://github.com/plger/SEtools) package.

Install with:

```r

BiocManager::install("plger/sechm")

```

Example usage:

```r

sechm(SE, features=myGenes, top_annotation="Time", do.scale=TRUE, gaps_at="Condition",

       mark=c("Gm14288","Fos","Arc"))

```

![](inst/docs/example.png)

See the package's [vignette](http://www.bioconductor.org/packages/release/bioc/vignettes/sechm/inst/doc/sechm.html) for more information!