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https://github.com/postpop/evidence
Fits a multi-dimensional LNP-Integrator model to behavioral data.
https://github.com/postpop/evidence
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Fits a multi-dimensional LNP-Integrator model to behavioral data.
- Host: GitHub
- URL: https://github.com/postpop/evidence
- Owner: postpop
- License: mit
- Created: 2013-09-01T00:41:43.000Z (about 11 years ago)
- Default Branch: master
- Last Pushed: 2015-04-24T02:45:08.000Z (over 9 years ago)
- Last Synced: 2023-08-03T13:09:19.835Z (over 1 year ago)
- Language: Matlab
- Homepage:
- Size: 176 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Evidence
Fits a multi-dimensional LNP-Integrator model to behavioral data.## Model structure:
1. Feature extraction: time-varying stimulus is processed by LN models
2. Integration: output of each LN ('firing rate') is integrated to yield a feature value ('spike count')
3. Weighing: Feature values of multiple LN models are linearly combined to yield behavioral response valueSome tweaks to optimize performance:
- filter is represented in a raised-cosine basis
- nonlinearity is parameterized (sigmoidal)
- GPU implementation of the model for faster evaluation during fitting (using Matlab's GPU capabilities).## Demo code
```matlab
load('demo/demo.mat')% loading stimulus and response
p.bee = Behave(stim, resp, ..);
pGa = GA(p);
```This should produce the following Figure:
![demo figure](demo/demo.png)
## Code base used in:
Jan Clemens, Bernhard Ronacher
Feature extraction and combination underlying decision making during courtship in grasshoppers
[_2013_, Journal of Neuroscience, 33(29):12136-12145](http://www.jneurosci.org/content/33/29/12136.abstract) | [pdf](http://www.princeton.edu/~janc/pdf/clemens_2013_feature.pdf)Jan Clemens, Matthias Hennig
Computational principles underlying the recognition of acoustic signals in insects
[_2013_, Journal of Computational Neuroscience, 35(1):75-85](http://link.springer.com/article/10.1007/s10827-013-0441-0) | [pdf](http://www.princeton.edu/~janc/pdf/clemens_2013_computational.pdf)