https://github.com/pprattis/chimeric-alignment-problem

A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.
https://github.com/pprattis/chimeric-alignment-problem

bioinformatics chimeric-alignment chromosomes computer-science nucleotides program python sequence student

Last synced: 2 months ago
JSON representation

A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.

• Host: GitHub
• URL: https://github.com/pprattis/chimeric-alignment-problem
• Owner: pprattis
• License: mit
• Created: 2019-11-26T13:20:16.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2019-11-26T13:24:26.000Z (over 5 years ago)
• Last Synced: 2025-02-04T21:44:51.781Z (4 months ago)
• Topics: bioinformatics, chimeric-alignment, chromosomes, computer-science, nucleotides, program, python, sequence, student
• Language: Python
• Homepage:
• Size: 3.91 KB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
# A Python Program / Project

**This is a Python project from my early days as a Computer Science student**

_This programm was created for the sixth semester class Bioinformatics

and is one of the final projects for the class_

> #### Description of project

>

>>A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.

> #### About this project

>

> - The comments to make the code understandable, are within the .py archive

> - This project was written in IDLE, Python’s Integrated Development and Learning Environment.

> - This program runs for Python version 2.7

> - This repository was created to show the variety of the work I did and experience I gained as a student

>