https://github.com/pranjaldhole/singularity-cellprofiler

Singularity-based linux container with CellProfiler 4 pre-installed into it.
https://github.com/pranjaldhole/singularity-cellprofiler

cellprofiler containers singularity singularity-containers singularity-hub tutorial-sourcecode

Last synced: 2 months ago
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Singularity-based linux container with CellProfiler 4 pre-installed into it.

• Host: GitHub
• URL: https://github.com/pranjaldhole/singularity-cellprofiler
• Owner: pranjaldhole
• License: mit
• Created: 2020-12-15T08:27:17.000Z (about 5 years ago)
• Default Branch: master
• Last Pushed: 2022-02-15T09:45:12.000Z (almost 4 years ago)
• Last Synced: 2025-03-12T18:35:08.154Z (9 months ago)
• Topics: cellprofiler, containers, singularity, singularity-containers, singularity-hub, tutorial-sourcecode
• Language: Shell
• Homepage:
• Size: 13.7 KB
• Stars: 1
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# Singularity-Images

Singularity-based setup of cellprofiler to compute image data on compute servers.

These instructions are derived with the reference from [singularity-tutorials](https://github.com/Singularity-tutorial/Singularity-tutorial.github.io) by David Godlove and [CellProfiler-Wiki](https://github.com/CellProfiler/CellProfiler/wiki).

## Contents

+ [Run CellProfiler 4 in singularity container](cellprofiler/README.md)

    - [Build singularity image](cellprofiler/README.md#build-singularity-image)

    - [Build sigularity sandbox](cellprofiler/README.md#sandbox-version)

    - [Running singularity container](cellprofiler/README.md#run-cellprofiler)

    - [Running cellprofiler as native app](cellprofiler/README.md#running-cellprofiler-as-native-app)