https://github.com/prody/nmwiz
Normal Mode Wizard
https://github.com/prody/nmwiz
Last synced: 7 months ago
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Normal Mode Wizard
- Host: GitHub
- URL: https://github.com/prody/nmwiz
- Owner: prody
- Created: 2013-09-15T20:06:10.000Z (almost 13 years ago)
- Default Branch: master
- Last Pushed: 2023-10-08T15:36:26.000Z (almost 3 years ago)
- Last Synced: 2024-03-26T00:17:37.996Z (over 2 years ago)
- Language: Tcl
- Homepage: csb.pitt.edu/NMWiz
- Size: 828 KB
- Stars: 6
- Watchers: 3
- Forks: 3
- Open Issues: 2
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Metadata Files:
- Readme: README.md
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README
Normal Mode Wizard
==================
Normal Mode Wizard (NMWiz) is a [VMD][] plugin designed for visual analysis of normal mode data. Modes may come from principal component, essential dynamics, normal mode analysis or may be any vector describing a molecular motion.
NMWiz can be used for:
* performing ANM, GNM, and PCA/EDA calculations via ProDy
* drawing customizable normal mode arrows
* making animations and sampling conformations
* making interactive square-fluctuations and cross-correlations plots
* comparing pairs of structures and drawing deformation vectors
Download
--------
NMWiz is distributed with VMD (1.9.1 and later).
Documentation
-------------
See [NMWiz][] homepage for documentation and tutorials.
Reference
---------
If you have used NMWiz in published work, please consider citing:
> Bakan A, Meireles LM, Bahar I. ProDy: Protein Dynamics Inferred from Theory and Experiments. **2011** *Bioinformatics* 27(11):1575-1577
[VMD]: http://www.ks.uiuc.edu/Research/vmd/
[NMWiz]: http://www.csb.pitt.edu/NMWiz