https://github.com/public-health-scotland/care-and-wellbeing-dashboard

https://github.com/public-health-scotland/care-and-wellbeing-dashboard

public-health scotland

Last synced: 5 days ago
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• Host: GitHub
• URL: https://github.com/public-health-scotland/care-and-wellbeing-dashboard
• Owner: Public-Health-Scotland
• Created: 2023-06-15T09:05:38.000Z (over 1 year ago)
• Default Branch: master
• Last Pushed: 2023-10-18T14:05:07.000Z (about 1 year ago)
• Last Synced: 2023-10-18T14:43:39.644Z (about 1 year ago)
• Topics: public-health, scotland
• Language: R
• Homepage: https://scotland.shinyapps.io/phs-care-and-wellbeing-dashboard/
• Size: 14.2 MB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

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README

        
# Care & Wellbeing Dashboard

-   This is a Public Health Scotland R shiny app available to the public at 

## Additional files needed to run the R shiny app

-   Various data files are required for this dashboard, the sources of which can be found in the metadata file. Contact [phs.covid19data&analytics\@phs.scot](mailto:phs.covid19data&[email protected]) for further information.

-   The following files must be obtained from colleagues:

    -   `shiny_app/www/google-analytics.html`

    -   `shiny_app/AppDeployment.R`

## Deploying the R shiny app

1.  Navigate to `data_transfer/data_transfer_master.R` and source. This prepares the data for use in the app.

2.  The section between lines 345 and 374 of the script above transfers the prepared files to `shiny_app/data`.

3.  Run app from `shiny_app/app.R` to view app locally to check content.

4.  Obtain `shiny_app/AppDeployment.R` from colleagues. Edit the paths to point to your local `shiny_app` folder.

5.  Source the script to deploy the app.

## Developing the R shiny app

### Data transfer layout

-   `data_transfer` contains the data transfer code. This is for transferring data from mixed inputs to a format ready for use in the app.

-   `data_transfer_master.R` is the script for doing the transfer and preparing the data folder

-   `data_transfer_sections` contains individual scripts called from `data_transfer_master.R`

### App code layout

-   `shiny_app` contains all the app code

-   `app.R` is the main app file

-   `setup.R` contains the necessary packages and some settings. This is run once on deployment and not for every new user. It also loads all the data in `shiny_app/data`.

-   `data` contains all the data needed for the shiny app. It is populated using the `data_transfer_master.R` script

-   `functions` contains general functions used in several places across the app.

    -   `core_functions.R` includes general functions

    -   `generic_charts.R` includes general plotting functions including functions to make specific plots.

-   `www` contains static images as well as additional css and javascript code

-   `modules` contains sub-folders of shiny modules used by the app

-   `indicators` contains sub-folders for each tab in the app.

    -   `care_and_wellbeing` contains sub-folders for each indicator that can be viewed within the care and wellbeing tab.

    -   All sub-folders and all folders contained in care and wellbeing contain a ui script, a server script, a functions script and an info script.