https://github.com/pulkit-khandelwal/upenn-picsl-brain-ex-vivo

7 Tesla ex vivo MRI of human brain hemispheres at UPenn
https://github.com/pulkit-khandelwal/upenn-picsl-brain-ex-vivo

Last synced: about 1 month ago
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7 Tesla ex vivo MRI of human brain hemispheres at UPenn

• Host: GitHub
• URL: https://github.com/pulkit-khandelwal/upenn-picsl-brain-ex-vivo
• Owner: Pulkit-Khandelwal
• Created: 2021-10-04T14:35:52.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2024-10-21T01:26:17.000Z (4 months ago)
• Last Synced: 2024-10-21T08:58:42.369Z (4 months ago)
• Language: Python
• Homepage:
• Size: 12.7 MB
• Stars: 2
• Watchers: 4
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

        
# As of Oct. 21st 2024, this repo has been moved to: https://github.com/Pulkit-Khandelwal/purple-mri/tree/main

# It will be maintained there.

# If you are looking for Docker stuff, see [here](https://github.com/Pulkit-Khandelwal/purple-mri/blob/main/docker/exvivo_docker.md)

### Welcome to hippogang/PICSL's ex vivo world at UPenn!

### Automated deep learning segmentation of high-resolution 7 T ex vivo MRI for quantitative analysis of structure/pathology correlations in neurodegenerative disease



         

      





         

      



If you are using this tool for you research, please consider citing the work:

```

Khandelwal, P., Duong, M.T., Sadaghiani, S., Lim, S., Denning, A., Chung, E., Ravikumar, S.,

Arezoumandan, S., Peterson, C., Bedard, M. and Capp, N., 2023.

Automated deep learning segmentation of high-resolution 7 T ex vivo MRI for quantitative analysis

of structure-pathology correlations in neurodegenerative diseases. arXiv preprint arXiv:2303.12237.

```

#### Main paper

- https://arxiv.org/abs/2303.12237

#### Previous pilot studies

- https://arxiv.org/abs/2110.07711

- https://alz-journals.onlinelibrary.wiley.com/doi/full/10.1002/alz.062628

- https://alz-journals.onlinelibrary.wiley.com/doi/full/10.1002/alz.065737

#### Utilities

- flash_to_t2w_ACPC.md : convert the FLASH space voxel coordinates to T2w image

- exvivo-segm-demo-docker.md : docker container and get going with parcellating ex vivo 7Tesla