https://github.com/pwilmart/PAW_pipeline

A Comet-based, best practices proteomics pipeline.
https://github.com/pwilmart/PAW_pipeline

comet protein-identification protein-inference proteomics python3 tmt

Last synced: 3 months ago
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A Comet-based, best practices proteomics pipeline.

• Host: GitHub
• URL: https://github.com/pwilmart/PAW_pipeline
• Owner: pwilmart
• License: mit
• Created: 2018-03-30T15:12:02.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2024-03-21T01:08:56.000Z (8 months ago)
• Last Synced: 2024-06-18T02:31:21.473Z (5 months ago)
• Topics: comet, protein-identification, protein-inference, proteomics, python3, tmt
• Language: Python
• Size: 97 MB
• Stars: 33
• Watchers: 8
• Forks: 9
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• awesome-proteomics - PAW_pipeline - python - a pretty much stock python raw file protoemics pipeline tool. It includes functions, to convert files, run comet, produce histograms. Can also do TMT - [paper](https://pubmed.ncbi.nlm.nih.gov/20157357/) (4. Assorted pipeline Tools / Table of Contents)