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https://github.com/pwwang/plotthis

plotthis is an R package that is built upon ggplot2 and other plotting packages.
https://github.com/pwwang/plotthis

ggplot2 plotting single-cell

Last synced: 14 days ago
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plotthis is an R package that is built upon ggplot2 and other plotting packages.

Host: GitHub
URL: https://github.com/pwwang/plotthis
Owner: pwwang
License: gpl-3.0
Created: 2024-09-04T06:08:09.000Z (4 months ago)
Default Branch: master
Last Pushed: 2024-12-07T04:23:19.000Z (27 days ago)
Last Synced: 2024-12-07T05:18:32.698Z (27 days ago)
Topics: ggplot2, plotting, single-cell
Language: R
Homepage: https://pwwang.github.io/plotthis/
Size: 39.9 MB
Stars: 27
Watchers: 1
Forks: 3
Open Issues: 0
Metadata Files:
- Readme: README.md
- License: LICENSE.md

Awesome Lists containing this project

README

        # plotthis 

`plotthis` is an R package that is built upon `ggplot2` and other plotting packages. It provides high-level APIs and a wide range of options to create stunning, publication-quality plots effortlessly.

## Installation

```r

install.packages("plotthis")

# or to install the latest version:

remotes::install_github("pwwang/plotthis")

devtools::install_github("pwwang/plotthis")

```

You can also install the package using `conda`:

```

$ conda install pwwang::r-plotthis

```

## Credits

`plotthis` is greatly inspired by the [`SCP`][1] package, but with the plotting functions detached from the Seurat object or single-cell data analysis. It is designed to be more flexible and general-purpose, and can be used for a wide range of data types and analysis scenarios.

## Gallery

[`AreaPlot`][2] / [`TrendPlot`][3] / [`ROCCurve`][28]

![area-trend](man/figures/area-trend.png)

[`ClustreePlot`][4] / [`LinePlot`][5] / [`Network`][27]

![clustree-line](man/figures/clustree-line.png)

[`Heatmap`][6]

![heatmap](man/figures/heatmap.png)

[CorPlot][24] / [CorPairsPlot][25]

![cor-corpairs](man/figures/cor-corpairs.png)

[`PieChart`][7] / [`RingPlot`][8]

![pie-ring](man/figures/pie-ring.png)

[`VolcanoPlot`][9] / [`WordCloudPlot`][10]

![volcano-wordcloud](man/figures/volcano-wordcloud.png)

[`BarPlot`][11] / [`SplitBarPlot`][11]

![bar-splitbar](man/figures/bar-splitbar.png)

[`BoxPlot`][12] / [`ViolinPlot`][12]

![box-violin](man/figures/box-violin.png)

[`ChordPlot`][13] / [`UpsetPlot`][14] / [`VennDiagram`][15]

![chord-upset-venn](man/figures/chord-upset-venn.png)

[`DensityPlot`][16] / [`Histogram`][16] / [`RidgePlot`][23]

![density-histogram](man/figures/density-histogram.png)

[`DimPlot`][17] / [`FeatureDimPlot`][17]

![dimplot](man/figures/dimplot.png)

[`DotPlot`][18] / [`ScatterPlot`][18] / [`LollipopPlot`][18]

![dot-scatter-lollipop](man/figures/dot-scatter-lollipop.png)

[`EnrichMap`][19] / [`EnrichNetwork`][19]

![enrich](man/figures/enrich.png)

[`GSEASummaryPlot`][20] / [`GSEAPlot`][20]

![gsea](man/figures/gsea.png)

[`RadarPlot`][21] / [`SpiderPlot`][21] / [`RarefactionPlot`][26]

![radar-spider](man/figures/radar-spider.png)

[`SankeyPlot`][22] / [`AlluvialPlot`][22]

![sankey-alluvial](man/figures/sankey-alluvial.png)

[1]: https://zhanghao-njmu.github.io/SCP/index.html

[2]: https://pwwang.github.io/plotthis/reference/AreaPlot.html

[3]: https://pwwang.github.io/plotthis/reference/TrendPlot.html

[4]: https://pwwang.github.io/plotthis/reference/ClustreePlot.html

[5]: https://pwwang.github.io/plotthis/reference/LinePlot.html

[6]: https://pwwang.github.io/plotthis/reference/Heatmap.html

[7]: https://pwwang.github.io/plotthis/reference/PieChart.html

[8]: https://pwwang.github.io/plotthis/reference/RingPlot.html

[9]: https://pwwang.github.io/plotthis/reference/VolcanoPlot.html

[10]: https://pwwang.github.io/plotthis/reference/WordCloudPlot.html

[11]: https://pwwang.github.io/plotthis/reference/barplot.html

[12]: https://pwwang.github.io/plotthis/reference/boxviolinplot.html

[13]: https://pwwang.github.io/plotthis/reference/chordplot.html

[14]: https://pwwang.github.io/plotthis/reference/upsetplot1.html

[15]: https://pwwang.github.io/plotthis/reference/venndiagram1.html

[16]: https://pwwang.github.io/plotthis/reference/densityhistoplot.html

[17]: https://pwwang.github.io/plotthis/reference/dimplot.html

[18]: https://pwwang.github.io/plotthis/reference/dotplot.html

[19]: https://pwwang.github.io/plotthis/reference/enrichmap1.html

[20]: https://pwwang.github.io/plotthis/reference/gsea.html

[21]: https://pwwang.github.io/plotthis/reference/radarplot.html

[22]: https://pwwang.github.io/plotthis/reference/sankeyplot.html

[23]: https://pwwang.github.io/plotthis/reference/RidgePlot.html

[24]: https://pwwang.github.io/plotthis/reference/CorPlot.html

[25]: https://pwwang.github.io/plotthis/reference/CorPairsPlot.html

[26]: https://pwwang.github.io/plotthis/reference/RarefactionPlot.html

[27]: https://pwwang.github.io/plotthis/reference/Network.html

[28]: https://pwwang.github.io/plotthis/reference/ROCCurve.html