https://github.com/pwwang/pyppl_jobtime

Job running time statistics for PyPPL
https://github.com/pwwang/pyppl_jobtime

Last synced: 14 days ago
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Job running time statistics for PyPPL

• Host: GitHub
• URL: https://github.com/pwwang/pyppl_jobtime
• Owner: pwwang
• License: mit
• Created: 2019-10-16T16:41:23.000Z (about 5 years ago)
• Default Branch: master
• Last Pushed: 2020-05-11T19:27:16.000Z (over 4 years ago)
• Last Synced: 2024-12-10T04:27:01.493Z (24 days ago)
• Language: Python
• Size: 57.6 KB
• Stars: 1
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# pyppl_jobtime

Job running time statistics for [PyPPL](https://github.com/pwwang/PyPPL).

## Installation

Require `R` and `ggplot2`.

```shell

pip install pyppl_jobtime

```

After this plugin is installed, a file named `job.time` will be created in each job directory with running time in seconds saved in it.

## Plotting the running time profile

```shell

pyppl jobtime --proc pVcfFix --outfile profile.png

```

![profile.png](./images/profile.png)

- Using violin plot:

    ```shell

    pyppl jobtime --proc pVcfFix --outfile violin.png --plottype violin

    ```

    ![violin.png](./images/violin.png)

- Changing process names:

    ```shell

    pyppl jobtime --outfile procnames.png \

        --proc pVcfFix --ggs.scale_x_discrete:dict \

        --ggs.scale_x_discrete.labels:list A B C

    ```

    ![procnames.png](./images/procnames.png)