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https://github.com/pyapp-kit/ndv

Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
https://github.com/pyapp-kit/ndv

arrays python visualization

Last synced: 2 days ago
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Simple, fast-loading, n-dimensional array viewer with minimal dependencies.

Host: GitHub
URL: https://github.com/pyapp-kit/ndv
Owner: pyapp-kit
License: bsd-3-clause
Created: 2024-06-07T20:55:54.000Z (8 months ago)
Default Branch: main
Last Pushed: 2025-02-05T01:07:00.000Z (9 days ago)
Last Synced: 2025-02-05T15:08:19.744Z (9 days ago)
Topics: arrays, python, visualization
Language: Python
Homepage: https://pyapp-kit.github.io/ndv/
Size: 5.64 MB
Stars: 57
Watchers: 5
Forks: 7
Open Issues: 40
Metadata Files:
- Readme: README.md
- License: LICENSE

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README

        # ndv

[![License](https://img.shields.io/pypi/l/ndv.svg?color=green)](https://github.com/pyapp-kit/ndv/raw/main/LICENSE)

[![PyPI](https://img.shields.io/pypi/v/ndv.svg?color=green)](https://pypi.org/project/ndv)

[![Python Version](https://img.shields.io/pypi/pyversions/ndv.svg?color=green)](https://python.org)

[![CI](https://github.com/pyapp-kit/ndv/actions/workflows/ci.yml/badge.svg)](https://github.com/pyapp-kit/ndv/actions/workflows/ci.yml)

[![codecov](https://codecov.io/gh/pyapp-kit/ndv/branch/main/graph/badge.svg)](https://codecov.io/gh/pyapp-kit/ndv)

Simple, fast-loading, asynchronous, n-dimensional array viewer, with minimal

dependencies.

Works in Qt, Jupyter, or wxPython.

```python

import ndv

data = ndv.data.cells3d()  # or any arraylike object

ndv.imshow(data)

```

![Montage](https://github.com/pyapp-kit/ndv/assets/1609449/712861f7-ddcb-4ecd-9a4c-ba5f0cc1ee2c)

[`ndv.imshow()`](https://pyapp-kit.github.io/ndv/latest/reference/ndv/#ndv.imshow)

creates an instance of

[`ndv.ArrayViewer`](https://pyapp-kit.github.io/ndv/latest/reference/ndv/controllers/#ndv.controllers.ArrayViewer),

which you can also use directly:

```python

import ndv

viewer = ndv.ArrayViewer(data)

viewer.show()

ndv.run_app()

```

> [!TIP]

> To embed the viewer in a broader Qt or wxPython application, you can

> access the viewer's

> [`widget`](https://pyapp-kit.github.io/ndv/latest/reference/ndv/controllers/#ndv.controllers.ArrayViewer.widget)

> attribute and add it to your layout.

## Features

- ⚡️ fast to import, fast to show

- 🪶 minimal dependencies

- 📦 supports arbitrary number of dimensions

- 🥉 2D/3D view canvas

- 🌠 supports [VisPy](https://github.com/vispy/vispy) or

  [pygfx](https://github.com/pygfx/pygfx) backends

- 🛠️ support [Qt](https://doc.qt.io), [wx](https://www.wxpython.org), or

  [Jupyter](https://jupyter.org) GUI frontends

- 🎨 colormaps provided by [cmap](https://cmap-docs.readthedocs.io/)

- 🏷️ supports named dimensions and categorical coordinate values (WIP)

- 🦆 supports most array types, including:

    - `numpy.ndarray`

    - `cupy.ndarray`

    - `dask.array.Array`

    - `jax.Array`

    - `pyopencl.array.Array`

    - `sparse.COO`

    - `tensorstore.TensorStore` (supports named dimensions)

    - `torch.Tensor` (supports named dimensions)

    - `xarray.DataArray` (supports named dimensions)

    - `zarr` (named dimensions WIP)

See examples for each of these array types in

[examples](https://github.com/pyapp-kit/ndv/tree/main/examples)

> [!NOTE]

> *You can add support for any custom storage class by subclassing

> `ndv.DataWrapper` and [implementing a couple

> methods](https://github.com/pyapp-kit/ndv/blob/main/examples/custom_store.py).

> (This doesn't require modifying ndv, but contributions of new wrappers are

> welcome!)*

## Installation

Because ndv supports many combinations of GUI and graphics frameworks,

you must install it along with additional dependencies for your desired backend.

See the [installation guide](https://pyapp-kit.github.io/ndv/latest/install/) for

complete details.

To just get started quickly using Qt and vispy:

  

```python

pip install ndv[qt]

```

For Jupyter with vispy, (no Qt or wxPython):

```python

pip install ndv[jup]

```

## Documentation

For more information, and complete API reference, see the

[documentation](https://pyapp-kit.github.io/ndv/).