https://github.com/pythonista7/sir-modeling-covid-in-bangalore

An attempt to better understand the statistical modeling of pandemics using a basic SIR model.
https://github.com/pythonista7/sir-modeling-covid-in-bangalore

bangalore bengaluru corona covid geopandas jupyter-notebook kepler-gl sir-model

Last synced: 21 days ago
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An attempt to better understand the statistical modeling of pandemics using a basic SIR model.

• Host: GitHub
• URL: https://github.com/pythonista7/sir-modeling-covid-in-bangalore
• Owner: Pythonista7
• Created: 2020-08-02T13:16:47.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2020-08-02T16:49:51.000Z (over 4 years ago)
• Last Synced: 2024-10-05T16:21:45.238Z (about 1 month ago)
• Topics: bangalore, bengaluru, corona, covid, geopandas, jupyter-notebook, kepler-gl, sir-model
• Language: Jupyter Notebook
• Homepage:
• Size: 6.91 MB
• Stars: 0
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# SIR-Modeling-Covid-in-Bangalore



### Flattening the curve ? Infection is peaking ? Have you wondered what that actually means ? 

This notebook is an attempt to simplify and help understand how to model a pandemic using S.I.R Model(Suseptible,Infected,Recovered).The predicted statistics from the notebook maybe inaccurate with real life observations but the intention of this notebook is to convey how avaiable data can be used for the purpose.

### What is happening here ?

1) Data clean-up and extrapolation 


  Firstly covid data from late April/early May was collect from a BBMP source which had labeled each ward in Bengaluru with color-coding to indicate sevirity of the the outbreak(this can be found in BBMP.csv). This data coupled with census data of Bengaluru is used to factor in attributes such as population and area size of each ward which maybe a potential factor in the spread of the disease.

2) SIR Modeling


  Both these data are combined and used to model the pandemic using the SIR technique.The data presented in all the graphs is for a set time frame of 90 or 120 days(can be changed for any time-period in the code) and day 0 can be thought of as first day an infection was recorded in the ward, for simplicity can be assumed as May 1st 2020.

3) Plotting using KeplerGL


  Once we have the data for a time period we plot and visualize it with line plots for each ward , its infection rate and recovery rate.We also plot this data onto the map of Bengaluru with the help of the shapefine (BBMP.GeoJSON) coupled with kepler-gl a powerful geo-visualization tool from uber you can check it out [here](https://github.com/keplergl/kepler.gl).

### If you do not wish to download and run this notebook but want to view the results you can find the SIR curve plots [here](https://pythonista7.github.io/plot) and the geo-plot of Bengaluru map [here](https://pythonista7.github.io/kepler_infection_map) (be sure to view the last few cells of this notebook to use the kepler map for visualization.)

Requriments

  * pandas

  * numpy

  * geopandas

  * keplergl

  * plotly