https://github.com/qiime2/qiime2

Source for the QIIME 2 Framework (Q2F).
https://github.com/qiime2/qiime2

hacktoberfest

Last synced: 12 months ago
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Source for the QIIME 2 Framework (Q2F).

• Host: GitHub
• URL: https://github.com/qiime2/qiime2
• Owner: qiime2
• License: bsd-3-clause
• Created: 2016-01-29T23:15:03.000Z (over 10 years ago)
• Default Branch: dev
• Last Pushed: 2025-07-09T19:02:02.000Z (12 months ago)
• Last Synced: 2025-07-09T19:14:56.872Z (12 months ago)
• Topics: hacktoberfest
• Language: Python
• Homepage: https://qiime2.org
• Size: 2.11 MB
• Stars: 509
• Watchers: 37
• Forks: 249
• Open Issues: 69
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

          
# QIIME 2 Framework (Q2F)

![](https://github.com/qiime2/qiime2/workflows/ci-dev/badge.svg)

Source code repository for the QIIME 2™ Framework.

Are you looking for:

- the QIIME 2 homepage? That's [https://qiime2.org](https://qiime2.org).

- learning resources for microbiome marker gene (i.e., amplicon) analysis? See the [QIIME 2 *amplicon distribution* documentation](https://amplicon-docs.readthedocs.io).

- learning resources for microbiome metagenome analysis? See the [MOSHPIT documentation](https://moshpit.readthedocs.io).

- installation instructions, plugins, books, videos, workshops, or resources? See the [QIIME 2 Library](https://library.qiime2.org).

- general help? See the [QIIME 2 Forum](https://forum.qiime2.org)

- information about contributing? See the [Contributing Guide](https://github.com/qiime2/.github/blob/main/CONTRIBUTING.md).

- information about the developers? See the [Caporaso Lab website](https://caplab.bio).

## Citing QIIME 2

If you use QIIME 2 for any published research, please cite [Bolyen, Rideout, Dillon, Bokulich, et al. (2019)](https://doi.org/10.1038/s41587-019-0209-9).