https://github.com/qpcr4vir/visualolideg
design of primers and probes for PCR/microarray by visual selection from aligned DNA sequences
https://github.com/qpcr4vir/visualolideg
aligned-dna-sequences bioinformatics excel microarray pcr primer science workbook
Last synced: 3 months ago
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design of primers and probes for PCR/microarray by visual selection from aligned DNA sequences
- Host: GitHub
- URL: https://github.com/qpcr4vir/visualolideg
- Owner: qPCR4vir
- License: gpl-3.0
- Created: 2015-08-31T15:18:02.000Z (almost 10 years ago)
- Default Branch: master
- Last Pushed: 2016-12-16T16:50:15.000Z (over 8 years ago)
- Last Synced: 2025-02-25T12:55:38.806Z (3 months ago)
- Topics: aligned-dna-sequences, bioinformatics, excel, microarray, pcr, primer, science, workbook
- Language: Visual Basic
- Homepage:
- Size: 901 KB
- Stars: 2
- Watchers: 2
- Forks: 0
- Open Issues: 8
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
## Please donwload the latest version from the Release tab https://github.com/qPCR4vir/VisualOliDeg/releases
Read [our Wiki](https://github.com/qPCR4vir/VisualOliDeg/wiki).
# Visual OligoDeg
Visual OligoDeg: design of candidate primers and probes for PCR and microarray by visual selection from aligned DNA sequences.
The workbook VisualOligoDeg facilitates visualization and selection of oligonucleotides hybridizing to all the sequences in a multi-alignment, or to most of the sequences of a given group.
It is used for the design of PCR and low-density microarrays.
Excel workbooks are treated as binary files by git (and GitHub) and thus most of the versioning possibilities
for source code are not available. In this repository the VBA code is saved as text to access these posibilities
and are exported or imported from the workbook as needed. This can lead to inconsistencies - that is why it is
best to simply donwload the workbook from the Release tab.
Problems? Suggestions? Open an "Issue" at https://github.com/qPCR4vir/VisualOliDeg/issues/new
or directly write to the author. For more information [visit our wiki](https://github.com/qPCR4vir/VisualOliDeg/wiki).
If you use it, please cite:
Ariel Vina-Rodriguez, Martin Eiden and Martin H. Groschup. 2017. "**_VisualOligoDeg_: visual selection of PCR and microarray primers and probes from aligned sequences.**". In press.