https://github.com/quantumjot/octopuslite

Automated timelapse acquisition
https://github.com/quantumjot/octopuslite

Last synced: 3 months ago
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Automated timelapse acquisition

• Host: GitHub
• URL: https://github.com/quantumjot/octopuslite
• Owner: quantumjot
• License: mit
• Created: 2019-08-15T08:15:44.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2021-04-13T14:54:53.000Z (about 4 years ago)
• Last Synced: 2025-01-12T23:43:46.500Z (4 months ago)
• Language: Python
• Size: 24.4 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md

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README

        
# OctopusLite

**WORK IN PROGRESS**

*Please note, this is not the full repository (yet)*

OctopusLite is a simple script based timelapse acquisition system. It uses other open-source hardware control software for image acquisition and some hardware synchronisation. Mostly takes care of stage control for long timelapse experiments. Integrates with other real-time image processing software (such as *Sequitr* and *BayesianTracker*) via RPC, to enable remote (automated) control over image acquisition.

### TODO

+ [x] Read/Set stage parameters from stage controller object

+ [x] Automatic placement of FOVs on microplates

+ [ ] Better hardware triggering of light sources

+ [ ] Finalise RPC control protocol