https://github.com/qupath/qupath-extension-align

QuPath extension to interactively align images
https://github.com/qupath/qupath-extension-align

Last synced: 10 months ago
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QuPath extension to interactively align images

• Host: GitHub
• URL: https://github.com/qupath/qupath-extension-align
• Owner: qupath
• License: gpl-3.0
• Created: 2021-06-02T15:23:15.000Z (about 5 years ago)
• Default Branch: main
• Last Pushed: 2025-07-02T11:59:53.000Z (11 months ago)
• Last Synced: 2025-07-02T12:46:41.034Z (11 months ago)
• Language: Java
• Size: 316 KB
• Stars: 23
• Watchers: 4
• Forks: 9
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE

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README

          
# QuPath Align extension

Welcome to the image alignment extension for [QuPath](http://qupath.github.io)!

This was previously the *Interactive image alignment* command in QuPath v0.2.

Not much loved by its creator, this command has proven useful to numerous people 

on the [Scientific Community Image Forum](http://image.sc).

It has been separated out to its own repository so that it can be developed 

independently from the main QuPath project.

And perhaps so someone will fork it and make a better version.

## Installing

To install the Align extension, download the latest `qupath-extension-align-[version].jar` file from [releases](https://github.com/qupath/qupath-extension-align/releases) and drag it onto the main QuPath window.

If you haven't installed any extensions before, you'll be prompted to select a QuPath user directory.

The extension will then be copied to a location inside that directory.

You might then need to restart QuPath (but not your computer).

## Building

You can build the extension from source with

```bash

gradlew clean build

```

The output .jar will be under `build/libs`.