https://github.com/r-barnes/barnes2013-bse
A model of BSE spread among multiple species
https://github.com/r-barnes/barnes2013-bse
Last synced: 2 months ago
JSON representation
A model of BSE spread among multiple species
- Host: GitHub
- URL: https://github.com/r-barnes/barnes2013-bse
- Owner: r-barnes
- Created: 2013-04-28T14:30:08.000Z (about 12 years ago)
- Default Branch: master
- Last Pushed: 2013-09-13T03:48:47.000Z (over 11 years ago)
- Last Synced: 2025-01-26T19:11:21.165Z (4 months ago)
- Language: Python
- Size: 125 KB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
Barnes2013-BSE
==============
This archive contains the code used in the manuscript
**Modeling of bovine spongiform encephalopathy in a two-species feedback loop**
By: Richard Barnes and Clarence Lehman
doi: [10.1016/j.epidem.2013.04.001](http://dx.doi.org/10.1016/j.epidem.2013.04.001)
To generate the figures, open a command line and type:
./run.sh
This will run **./one\_species\_model.py** and **./two\_species\_model.py**
with the arguments used to generate the figures in the manuscript.
The figures will then be automatically plotted with the **./plot** script.
The figures will then be automatically converted to PDF and cropped.
Please contact Richard Barnes ([email protected]) with any questions or comments.
Requirements
============
* Python
* Scipy
* GnuPlot
* epspdf (from TexLive)
* pdfcrop (from TeXLive)
* This will run best on GNU/Linux systems