Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

Awesome Lists | Featured Topics | Projects

https://github.com/r-dbi/RMariaDB

An R interface to MariaDB
https://github.com/r-dbi/RMariaDB

database mariadb r

Last synced: about 1 month ago
JSON representation

An R interface to MariaDB

Host: GitHub
URL: https://github.com/r-dbi/RMariaDB
Owner: r-dbi
License: other
Created: 2017-07-05T15:35:16.000Z (about 7 years ago)
Default Branch: main
Last Pushed: 2024-05-02T01:38:46.000Z (5 months ago)
Last Synced: 2024-05-23T02:39:10.177Z (4 months ago)
Topics: database, mariadb, r
Language: R
Homepage: https://rmariadb.r-dbi.org
Size: 12.3 MB
Stars: 125
Watchers: 12
Forks: 40
Open Issues: 19
Metadata Files:
- Readme: README.md
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE
- Code of conduct: .github/CODE_OF_CONDUCT.md
- Security: .github/security.md

Awesome Lists containing this project

jimsghstars - r-dbi/RMariaDB - An R interface to MariaDB (R)

README

        RMariaDB

======

[![rcc](https://github.com/r-dbi/RMariaDB/workflows/rcc/badge.svg)](https://github.com/r-dbi/RMariaDB/actions)

[![Codecov test coverage](https://codecov.io/gh/r-dbi/RMariaDB/branch/main/graph/badge.svg)](https://app.codecov.io/gh/r-dbi/RMariaDB?branch=main)

[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/RMariaDB)](https://cran.r-project.org/package=RMariaDB)

[![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/RMariaDB)](https://cran.r-project.org/package=RMariaDB)

RMariaDB is a database interface and MariaDB driver for R. This version is aimed at full compliance with the [DBI specification](https://cran.r-project.org/package=DBI/vignettes/spec.html), as a replacement for the old [RMySQL](https://cran.r-project.org/package=RMySQL) package.

## Hello World

```R

library(DBI)

# Connect to my-db as defined in ~/.my.cnf

con <- dbConnect(RMariaDB::MariaDB(), group = "my-db")

dbListTables(con)

dbWriteTable(con, "mtcars", mtcars)

dbListTables(con)

dbListFields(con, "mtcars")

dbReadTable(con, "mtcars")

# You can fetch all results:

res <- dbSendQuery(con, "SELECT * FROM mtcars WHERE cyl = 4")

dbFetch(res)

dbClearResult(res)

# Or a chunk at a time

res <- dbSendQuery(con, "SELECT * FROM mtcars WHERE cyl = 4")

while(!dbHasCompleted(res)){

  chunk <- dbFetch(res, n = 5)

  print(nrow(chunk))

}

# Clear the result

dbClearResult(res)

# Disconnect from the database

dbDisconnect(con)

```

## Installation

Binary packages for __OS X__ or __Windows__ can be installed directly from CRAN:

```r

install.packages("RMariaDB")

```

The development version from github:

```R

# install.packages("devtools")

devtools::install_github("r-dbi/DBI")

devtools::install_github("r-dbi/RMariaDB")

```

Discussions associated with DBI and related database packages take place on [R-SIG-DB](https://stat.ethz.ch/mailman/listinfo/r-sig-db).

The website [Databases using R](https://db.rstudio.com/) describes the tools and best practices in this ecosystem.

Installation from source on Linux or OS X currently requires [`MariaDB Connector/C`](https://downloads.mariadb.org/connector-c/), preferably in version 2.3.4/3.0.3 or later.

With older versions, character and blob columns do not work reliably.

Alternatively, Oracle's [libmysqlclient](https://packages.debian.org/buster/default-libmysqlclient-dev) can be used.

### Connector/C

On recent __Debian__ or __Ubuntu__ install [libmariadb-dev](https://packages.debian.org/testing/libmariadb-dev).

```

sudo apt-get install -y libmariadb-dev

```

On __Fedora__,  __CentOS__ or __RHEL__ we need [mariadb-devel](https://src.fedoraproject.org/rpms/mariadb):

```

sudo yum install mariadb-devel

````

On __OS X__ use [mariadb-connector-c](https://github.com/Homebrew/homebrew-core/blob/master/Formula/m/mariadb-connector-c.rb) from Homebrew:

```

brew install mariadb-connector-c

```

### MySQL client library

On recent __Debian__ or __Ubuntu__ install [libmysqlclient-dev](https://packages.debian.org/buster/default-libmysqlclient-dev).

```

sudo apt-get install -y libmysqlclient-dev

```

On __Fedora__,  __CentOS__ or __RHEL__ we need mysql-devel, see https://apps.fedoraproject.org/packages/mysql-devel:

```

sudo yum install mysql-devel

```

Follow [instructions](https://dev.mysql.com/doc/mysql-yum-repo-quick-guide/en/) to enable the MySQL yum repository if the above command attempts to install MariaDB files.

On __OS X__ use [mysql-connector-c](https://github.com/Homebrew/homebrew-core/blob/master/Formula/m/mysql-connector-c++.rb) from Homebrew:

```

brew install mysql-connector-c++

```

## MariaDB configuration file

Instead of specifying a username and password in calls to `dbConnect()`, it's better to set up a MariaDB configuration file that names the databases that you connect to most commonly. This file should live in `~/.my.cnf` and look like:

```

[database_name]

option1=value1

option2=value2

```

If you want to run the examples, you'll need to set the proper options in the `[rs-dbi]` group of any MariaDB option file, such as /etc/my.cnf or the .my.cnf file in your home directory. For a default single user install of MariaDB, the following code should work:

```

[rs-dbi]

database="test"

user="root"

password=""

```

## Acknowledgements

Many thanks to Christoph M. Friedrich, John Heuer, Kurt Hornik, Torsten Hothorn, Saikat Debroy, Matthew Kelly, Brian D. Ripley, Mikhail Kondrin, Jake Luciani, Jens Nieschulze, Deepayan Sarkar, Louis Springer, Duncan Temple Lang, Luis Torgo, Arend P. van der Veen, Felix Weninger, J. T. Lindgren, Crespin Miller, and Michal Okonlewski, Seth Falcon and Paul Gilbert for comments, suggestions, bug reports, and patches to the original [RMySQL](https://cran.r-project.org/package=RMySQL) package, and to all contributors (of [code](https://github.com/r-dbi/RMariaDB/graphs/contributors) and discussions) to this package.

---

Please note that the 'RMariaDB' project is released with a

[Contributor Code of Conduct](https://rmariadb.r-dbi.org/CODE_OF_CONDUCT.html).

By contributing to this project, you agree to abide by its terms.