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https://github.com/r-lib/memoise
Easy memoisation for R
https://github.com/r-lib/memoise
memoise r
Last synced: 3 months ago
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Easy memoisation for R
- Host: GitHub
- URL: https://github.com/r-lib/memoise
- Owner: r-lib
- License: other
- Created: 2010-11-11T17:37:44.000Z (almost 14 years ago)
- Default Branch: main
- Last Pushed: 2023-12-05T17:01:13.000Z (11 months ago)
- Last Synced: 2024-08-02T05:59:09.881Z (3 months ago)
- Topics: memoise, r
- Language: R
- Homepage: https://memoise.r-lib.org
- Size: 301 KB
- Stars: 315
- Watchers: 10
- Forks: 59
- Open Issues: 41
-
Metadata Files:
- Readme: README.Rmd
- License: LICENSE
Awesome Lists containing this project
- jimsghstars - r-lib/memoise - Easy memoisation for R (R)
README
---
output: github_document
editor_options:
chunk_output_type: console
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# memoise
[](https://CRAN.R-project.org/package=memoise)
[](https://github.com/r-lib/memoise/actions)
[](https://app.codecov.io/gh/r-lib/memoise?branch=main)
The memoise package makes it easy to memoise R functions. **Memoisation** () caches function calls so that if a previously seen set of inputs is seen, it can return the previously computed output.
# Installation
Install from CRAN with
```{r, eval = FALSE}
install.packages("memoise")
```
## Usage
To memoise a function, use `memoise()`:
```{r}
library(memoise)
f <- function(x) {
Sys.sleep(1)
mean(x)
}
mf <- memoise(f)
```
```{r eval=FALSE}
system.time(mf(1:10))
#> user system elapsed
#> 0.002 0.000 1.003
system.time(mf(1:10))
#> user system elapsed
#> 0.000 0.000 0.001
```
You can clear `mf`'s cache with:
```{r eval=FALSE}
forget(mf)
```
And you can test whether a function is memoised with `is.memoised()`.
## Caches
By default, memoise uses an in-memory cache, using `cache_mem()` from the [cachem](https://cachem.r-lib.org/) package. `cachem::cache_disk()` allows caching using files on a local filesystem.
Both `cachem::cache_mem()` and `cachem::cache_disk()` support automatic pruning by default; this means that they will not keep growing past a certain size, and eventually older items will be removed from the cache. The default size `cache_mem()` is 512 MB, and the default size for a `cache_disk()` is 1 GB, but this can be customized by specifying `max_size`:
```{r}
# 100 MB limit
cm <- cachem::cache_mem(max_size = 100 * 1024^2)
mf <- memoise(f, cache = cm)
```
You can also change the maximum age of items in the cache with `max_age`:
```{r}
# Expire items in cache after 15 minutes
cm <- cachem::cache_mem(max_age = 15 * 60)
mf <- memoise(f, cache = cm)
```
By default, a `cache_disk()` uses a subdirectory the R process's temp directory, but it is possible to specify the directory. This is useful for persisting a cache across R sessions, sharing a cache among different processes, or even for synchronizing across the network.
```{r, eval = FALSE}
# Store in "R-myapp" directory inside of user-level cache directory
cd <- cachem::cache_disk(rappdirs::user_cache_dir("R-myapp"))
# Store in Dropbox
cdb <- cachem::cache_disk("~/Dropbox/.rcache")
```
A single cache object can be shared among multiple memoised functions. By default, the cache key includes not only the arguments to the function, but also the body of the function. This essentially eliminates the possibility of a cache collision, even if two memoised functions are called with the same arguments.
```{r}
m <- cachem::cache_mem()
times2 <- memoise(function(x) { x * 2 }, cache = m)
times4 <- memoise(function(x) { x * 4 }, cache = m)
times2(10)
times4(10)
```
### Cache API
It is possible to use other caching backends with memoise. These caching objects must be key-value stores which use the same API as those from the [cachem](https://cachem.r-lib.org/) package. The following methods are required for full compatibiltiy with memoise:
* `$set(key, value)`: Sets a `key` to `value` in the cache.
* `$get(key)`: Gets the value associated with `key`. If the key is not in the cache, this returns an object with class `"key_missing"`.
* `$exists(key)`: Checks for the existence of `key` in the cache.
* `$remove(key)`: Removes the value for `key` from the cache.
* `$reset()`: Resets the cache, clearing all key/value pairs.
Note that the sentinel value for missing keys can be created by calling `cachem::key_missing()`, or `structure(list(), class = "key_missing")`.
### Old-style cache objects
Before version 2.0, memoise used different caching objects, which did not have automatic pruning and had a slightly different API. These caching objects can still be used, but we recommend using the caching objects from cachem when possible.
With the old-style caching objects, memoise first checks for the existence of a key in the cache, and if present, it fetches the value. This results in a possible race condition (when using caches other than the memory cache): an object could be deleted from the cache after the existence check, but before the value is fetched. With the new cachem-style caching objects, the possibility of a a race condition is eliminated: memoise simply tries to fetch the key, and if it's not present in the cache, the cache returns a sentinel value indicating that it's missing. (Note that the caching objects must also be designed to avoid a similar race condition internally.)
The following cache objects do not currently have an equivalent in cachem.
- `cache_s3()` allows caching on [Amazon S3](https://aws.amazon.com/s3/) Requires you to specify a bucket using `cache_name`. When creating buckets, they must be unique among all s3 users when created.
```{r, eval = FALSE}
Sys.setenv(
"AWS_ACCESS_KEY_ID" = "",
"AWS_SECRET_ACCESS_KEY" = ""
)
cache <- cache_s3("")
```
- `cache_gcs()` saves the cache to Google Cloud Storage. It requires you to authenticate by downloading a JSON authentication file, and specifying a pre-made bucket:
```{r, eval = FALSE}
Sys.setenv(
"GCS_AUTH_FILE" = "",
"GCS_DEFAULT_BUCKET" = "unique-bucket-name"
)
gcs <- cache_gcs()
```