https://github.com/raamana/visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
https://github.com/raamana/visualqc

alignment anatomical-mri cortex fmri freesurfer medical-imaging mri-images neuroimaging neuroscience outlier-detection outlier-removal qc quality-control registration

Last synced: about 1 month ago
JSON representation

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

• Host: GitHub
• URL: https://github.com/raamana/visualqc
• Owner: raamana
• License: apache-2.0
• Created: 2017-10-06T01:51:17.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2024-06-19T13:24:16.000Z (8 months ago)
• Last Synced: 2024-10-30T05:58:07.103Z (3 months ago)
• Topics: alignment, anatomical-mri, cortex, fmri, freesurfer, medical-imaging, mri-images, neuroimaging, neuroscience, outlier-detection, outlier-removal, qc, quality-control, registration
• Language: Python
• Homepage: https://raamana.github.io/visualqc/
• Size: 104 MB
• Stars: 73
• Watchers: 7
• Forks: 13
• Open Issues: 37
• Metadata Files:
  • Readme: README.rst
  • Changelog: HISTORY.rst
  • Contributing: CONTRIBUTING.rst
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md
  • Authors: AUTHORS.rst

Awesome Lists containing this project

README

        


.. image:: https://img.shields.io/pypi/v/visualqc.svg

        :target: https://pypi.python.org/pypi/visualqc

.. image:: https://app.codacy.com/project/badge/Grade/c67fbfc899d04f5aacd7a0070aeb704d

        :target: https://www.codacy.com/gh/raamana/visualqc/dashboard?utm_source=github.com&utm_medium=referral&utm_content=raamana/visualqc&utm_campaign=Badge_Grade

.. image:: https://img.shields.io/badge/say-thanks-ff69b4.svg

        :target: https://saythanks.io/to/raamana

==========================================================================================

VisualQC : software development kit for medical and neuroimaging quality control

==========================================================================================

.. image:: docs/vqc_logo_small.png

.. image:: docs/visualqc_poster_comprehensive.png

Links

-------

* Software Documentation: https://raamana.github.io/visualqc

* `User Manual `_

* Free software: Apache 2.0 license

* Pure python package (no licensing issues ala matlab, easy to install and update requiring no other external installations or maintenance)

* Generic design for API that can be adapted for other domains, imaging or medical or otherwise.

Galleries

----------

* NEW: `Defacing QC `_

* `Freesurfer `_

* `Functional MRI `_

* `Registration/Alignment quality `_

* `Structural T1w MRI `_

* `Volumetric Segmentation `_

Citation

--------------

If you used ``VisualQC`` in your analyses or projects, whether or not it was reported in the main paper, please consider citing the paper below:

- Pradeep Reddy Raamana (2023), “VisualQC: Software Development Kit for Medical and Neuroimaging Quality Control and Assurance.” Aperture Neuro 3 (March): 1–4. https://doi.org/10.52294/e130fcd2-ce83-4222-856d-c82022013a50

Bibtex:

.. code-block:: tex

    @article{Raamana_2022_VisualQCSoftware,

    	journal={Aperture Neuro},

    	doi={10.52294/e130fcd2-ce83-4222-856d-c82022013a50},

    	publisher={Organization for Human Brain Mapping},

    	title={VisualQC: software development kit for medical and neuroimaging quality control and assurance},

    	volume=3,

    	author={Reddy Raamana, Pradeep},

    	pages={1--4},

    	date={2023-03-02},

    	year=2023,

    	month=3,

    	day=2,

    }

More details at ``_

Contributions

--------------

`Contributions are welcome. `_

---

.. image:: https://img.shields.io/badge/say-thanks-ff69b4.svg

        :target: https://saythanks.io/to/raamana