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https://github.com/rainoffallingstar/beaverdowncontainers

BeaverdownContainers-Archlinux/Manjaro based bioinformatic container
https://github.com/rainoffallingstar/beaverdowncontainers

archlinux bioinformatics docker-image manjaro r rstudio-server snakemake

Last synced: 29 days ago
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BeaverdownContainers-Archlinux/Manjaro based bioinformatic container

Host: GitHub
URL: https://github.com/rainoffallingstar/beaverdowncontainers
Owner: rainoffallingstar
License: mit
Created: 2024-09-08T04:23:44.000Z (2 months ago)
Default Branch: main
Last Pushed: 2024-09-21T03:59:19.000Z (about 2 months ago)
Last Synced: 2024-10-09T22:23:17.950Z (29 days ago)
Topics: archlinux, bioinformatics, docker-image, manjaro, r, rstudio-server, snakemake
Language: Shell
Homepage:
Size: 46.9 KB
Stars: 2
Watchers: 1
Forks: 0
Open Issues: 0
Metadata Files:
- Readme: README.md
- License: LICENSE

Awesome Lists containing this project

README

# BeaverdownContainers

[![](https://github.com/rainoffallingstar/BeaverdownContainers/actions/workflows/beavermake.yml/badge.svg)](https://github.com/rainoffallingstar/BeaverdownContainers/actions/workflows/beavermake.yml) [![](https://github.com/rainoffallingstar/BeaverdownContainers/actions/workflows/beaverworker.yml/badge.svg)](https://github.com/rainoffallingstar/BeaverdownContainers/actions/workflows/beaverworker.yml)

[![](https://github.com/rainoffallingstar/BeaverdownContainers/actions/workflows/beaverstudio.yml/badge.svg)](https://github.com/rainoffallingstar/BeaverdownContainers/actions/workflows/beaverstudio.yml) [![](https://github.com/rainoffallingstar/BeaverdownContainers/actions/workflows/beaverjupyter.yml/badge.svg)](https://github.com/rainoffallingstar/BeaverdownContainers/actions/workflows/beaverjupyter.yml)

Efficient Docker containers for enhancing Beaverdown2 workflow.

Designed for performance and ease of use, BeaverdownContainers streamlines bioinformatics and data analysis tasks.

## beavermake

A Manjaro-based container optimized for Snakemake, leveraging the base image from [DanySK/docker-manjaro-linux-with-yay](https://github.com/DanySK/docker-manjaro-linux-with-yay).

``` bash
docker pull fallingstar10/beavermake:latest

#or

dockerR::image_pull("fallingstar10/beavermake:latest")

#then run it
docker run -it --name beavermake fallingstar10/beavermake:latest
```

## beaverworker

Enhanced with essential bioinformatics tools, designed to complement beavermake.

``` bash
docker pull fallingstar10/beaverworker:latest

#or

dockerR::image_pull("fallingstar10/beaverworker:latest")

#then run it
docker run -it --name beaverworker fallingstar10/beaverworker:latest
```

## beaverstudio

An RStudio server integrated with beaverworker, offering a powerful environment for data analysis.

``` bash
docker pull fallingstar10/beaverstudio:latest

#or

dockerR::image_pull("fallingstar10/beaverstudio:latest")

#then run it
docker run -p 8787:8787 -p 8080:8080 --name beaverstudio fallingstar10/beaverstudio:latest
```

## beaverjupyter

An jupyterlab server integrated with beaverworker, offering a powerful environment for data analysis.

``` bash
docker pull fallingstar10/beaverjupyter:latest

#or

dockerR::image_pull("fallingstar10/beaverjupyter:latest")

#then run it
docker run -p 8889:8889 --name beaverjupyter fallingstar10/beaverjupyter:latest
```