https://github.com/ramiromagno/boggy

Real-Time PCR Data Sets by Boggy et al. (2010)
https://github.com/ramiromagno/boggy

qpcr r

Last synced: 8 days ago
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Real-Time PCR Data Sets by Boggy et al. (2010)

• Host: GitHub
• URL: https://github.com/ramiromagno/boggy
• Owner: ramiromagno
• License: cc-by-4.0
• Created: 2024-04-24T15:22:02.000Z (6 months ago)
• Default Branch: main
• Last Pushed: 2024-04-24T15:40:46.000Z (6 months ago)
• Last Synced: 2024-10-05T11:18:00.904Z (about 1 month ago)
• Topics: qpcr, r
• Language: R
• Homepage: http://rmagno.eu/boggy/
• Size: 425 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.Rmd
  • License: LICENSE.md

Awesome Lists containing this project

README

        
---

output: github_document

---

```{r, include = FALSE}

knitr::opts_chunk$set(

  collapse = TRUE,

  comment = "#>",

  fig.path = "man/figures/README-",

  out.width = "100%"

)

```

# boggy

[![CRAN status](https://www.r-pkg.org/badges/version/boggy)](https://CRAN.R-project.org/package=boggy)

[![R-CMD-check](https://github.com/ramiromagno/boggy/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ramiromagno/boggy/actions/workflows/R-CMD-check.yaml)

`{boggy}` provides the real-time PCR data set _s1_ by Boggy et al. (2010) in

tidy format.

## Installation

``` r

install.packages("boggy")

```

## Usage

```{r example, dev='svg'}

library(boggy)

library(ggplot2)

s1 |>

  ggplot(mapping = aes(

    x = cycle,

    y = fluor,

    group = well,

    col = format(copies, big.mark = ",", scientific = FALSE)

  )) +

  geom_line(linewidth = 0.2) +

  geom_point(size = 0.2) +

  labs(color = "Copy number")

```

## References

Gregory J. Boggy & Peter J. Woolf. A Mechanistic Model of PCR for Accurate

Quantification of Quantitative PCR Data. PLoS ONE 5:8 (2010). doi:

[10.1371/journal.pone.0012355](https://doi.org/10.1371/journal.pone.0012355).