https://github.com/razielar/lncrna_annotation_cufflinks_nf
https://github.com/razielar/lncrna_annotation_cufflinks_nf
Last synced: 3 months ago
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- Host: GitHub
- URL: https://github.com/razielar/lncrna_annotation_cufflinks_nf
- Owner: razielar
- Created: 2020-01-31T14:21:13.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2020-02-02T17:12:14.000Z (over 5 years ago)
- Last Synced: 2025-01-11T14:48:38.427Z (4 months ago)
- Language: Nextflow
- Size: 19.5 MB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# lncRNA_annotation_cufflinks_nf
To run the pipeline:
```{r}
nextflow run cbcrg/lncRNA-Annotation-nf --reads './regeneration/reads/*read{1,2}.fastq.gz' --genome ./regeneration/genome/dm6.fa --annotation './regeneration/annotation/dmel.r6.29.gtf' --output regene_results/ -with-singularity -profile crg
```