https://github.com/repronim/ds000003-qc

https://github.com/repronim/ds000003-qc

Last synced: 5 months ago
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• Host: GitHub
• URL: https://github.com/repronim/ds000003-qc
• Owner: ReproNim
• Created: 2019-08-31T12:40:06.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2019-08-31T12:40:29.000Z (almost 7 years ago)
• Last Synced: 2025-04-09T21:49:11.591Z (about 1 year ago)
• Language: HTML
• Size: 21.5 MB
• Stars: 0
• Watchers: 9
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
This is a demo dataset to demonstrate use of ///repronim/containers and YODA

principles to provide a DataLad dataset (git/git-annex repository).  The "script"

used to produce it was:

	#!/bin/bash

	set -eu

	# A demo from repronim/containers' README.md

	# Create output dataset

	datalad create -d data/ds000003-qc -c text2git

	cd data/ds000003-qc

	# Install our containers collection:

	datalad install -d . http://github.com/ReproNim/containers

	# Install input data:

	datalad install -d . -s https://github.com/ReproNim/ds000003-demo sourcedata

	# Execute desired preprocessing while creating a provenance record

	# in git history

	datalad containers-run \

			-n containers/bids-mriqc \

			--input sourcedata \

			--output . \

			'{inputs}' '{outputs}' participant group

and also present in the documentation of the https://github.com/ReproNim/containers.