https://github.com/repronim/simple_workflow-02
https://github.com/repronim/simple_workflow-02
Last synced: 8 months ago
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- Host: GitHub
- URL: https://github.com/repronim/simple_workflow-02
- Owner: ReproNim
- Created: 2017-06-22T23:16:48.000Z (almost 9 years ago)
- Default Branch: master
- Last Pushed: 2020-03-20T17:48:25.000Z (about 6 years ago)
- Last Synced: 2025-04-09T21:49:03.638Z (about 1 year ago)
- Language: Jupyter Notebook
- Size: 1.13 MB
- Stars: 1
- Watchers: 6
- Forks: 2
- Open Issues: 10
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Metadata Files:
- Readme: README.md
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README
# Version 2: simple_workflow - the retour
## 1: Query on csv:
- find controls with IQ measures
- keep if they come from sites with more than 10 subjects
## Overview Document
A google doc vision outlineing the overall draft approach is provided here: https://docs.google.com/document/d/1Mp3a81yTaugRs7ekpUpX247tuTv8lclhEDaiCb5HksM/edit#
## Update as of 6/1/19
- The container is at: https://hub.docker.com/r/mgxd/mindboggle/tags
1.4.0-aws (simple workflow was run inside this container. and mindboggle runs freesurfer and ants).
- The .ttl files are at: https://github.com/dbkeator/simple2_NIDM_examples
- Example queries:
- ILX decoder: https://github.com/dbkeator/simple2_NIDM_examples/blob/master/datasets.datalad.org/nidm.json
- Results of continer run at: https://sensein.github.io/open-data-processing/
- CSV version of Simple2 data: https://www.dropbox.com/s/8lqhbsh0f25zem1/simple2.csv?dl=0
- Sample statistics: https://github.com/satra/simple2-ohbm/blob/master/abide1-view.ipynb
- also https://github.com/jbpoline/simple2_analysis
- Hypotheses: https://osf.io/yuv52