https://github.com/reubendo/slicerskinextractor
https://github.com/reubendo/slicerskinextractor
Last synced: about 1 year ago
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- Host: GitHub
- URL: https://github.com/reubendo/slicerskinextractor
- Owner: ReubenDo
- Created: 2022-01-20T20:46:21.000Z (over 4 years ago)
- Default Branch: main
- Last Pushed: 2023-05-22T22:54:30.000Z (about 3 years ago)
- Last Synced: 2025-04-12T03:54:02.341Z (about 1 year ago)
- Language: Python
- Size: 280 KB
- Stars: 4
- Watchers: 1
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# Skin surface extraction
This repository contains the code for a Slicer module that can be used to automatically extract the skin surface on different brain imaging modalities (CT, MR) and different sequences (T1, T2, FLAIR, etc).
This is a project for the [36th NA-MIC Project Week](https://projectweek.na-mic.org/PW36_2022_Virtual/Projects/SkinSegmentation/).
## Installation
### Option 1
Clone this repository:
```shell
git clone https://github.com/ReubenDo/SlicerSkinExtractor.git
```
### Option 2
[Download the zipped directory](https://github.com/ReubenDo/SlicerSkinExtractor/archive/refs/heads/main.zip) and unzip it.
### Add directory in Slicer
In Slicer, go to `Edit -> Application Settings -> Modules` and add the cloned/downloaded folder to the `Additional module paths`. When prompted, restart Slicer.
## Algorithm description
TODO