https://github.com/rformassspectrometry/msbackendhmdb

Mass spectrometry data backend (MsBackend) for Spectra supporting import and handling of MS/MS spectra from the Human Metabolome Database (HMDB).
https://github.com/rformassspectrometry/msbackendhmdb

data-import mass-spectrometry metabolomics

Last synced: about 1 year ago
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Mass spectrometry data backend (MsBackend) for Spectra supporting import and handling of MS/MS spectra from the Human Metabolome Database (HMDB).

• Host: GitHub
• URL: https://github.com/rformassspectrometry/msbackendhmdb
• Owner: rformassspectrometry
• Created: 2019-06-21T18:56:07.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2022-05-13T08:02:44.000Z (almost 4 years ago)
• Last Synced: 2025-01-17T00:11:21.607Z (about 1 year ago)
• Topics: data-import, mass-spectrometry, metabolomics
• Language: R
• Homepage: https://rformassspectrometry.github.io/MsBackendHmdb/
• Size: 95.7 KB
• Stars: 2
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# Mass spectrometry data backends for The Human Metabolome Database (HMDB)

[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)

[![R-CMD-check-bioc](https://github.com/RforMassSpectrometry/MsBackendHmdb/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/RforMassSpectrometry/MsBackendHmdb/actions?query=workflow%3AR-CMD-check-bioc)

[![codecov.io](http://codecov.io/github/rformassspectrometry/MsBackendHmdb/coverage.svg?branch=master)](http://codecov.io/github/rformassspectrometry/MsBackendHmdb?branch=master)

[![license](https://img.shields.io/badge/license-Artistic--2.0-brightgreen.svg)](https://opensource.org/licenses/Artistic-2.0)

The `MsBackendHmdb` package provides functionality to import and handle MS/MS

spectrum data from The Human Metabolome Database

[HMDB](http://www.hmdb.ca). The package defines the `MsBackendHmdbXml` backend

which can be used to import and use MS2 spectrum data from HMDB xml files with

the [Spectra](https://github.com/rformassspectrometry/Spectra) R package.

For more information see the package vignette.